View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14300_low_25 (Length: 403)

Name: NF14300_low_25
Description: NF14300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14300_low_25
NF14300_low_25
[»] chr8 (3 HSPs)
chr8 (9-388)||(18010968-18011347)
chr8 (205-388)||(18015180-18015363)
chr8 (9-217)||(43441597-43441805)
[»] chr4 (5 HSPs)
chr4 (9-388)||(15537245-15537619)
chr4 (205-388)||(25322962-25323145)
chr4 (9-217)||(16937758-16937966)
chr4 (9-149)||(25428533-25428673)
chr4 (18-149)||(1541283-1541414)
[»] chr7 (4 HSPs)
chr7 (9-217)||(35973068-35973276)
chr7 (9-217)||(35994480-35994688)
chr7 (9-217)||(8985931-8986139)
chr7 (9-212)||(43582817-43583020)
[»] chr6 (2 HSPs)
chr6 (9-217)||(26253964-26254172)
chr6 (18-149)||(7033985-7034116)
[»] chr3 (1 HSPs)
chr3 (64-217)||(2765590-2765743)
[»] chr5 (2 HSPs)
chr5 (9-140)||(20334113-20334244)
chr5 (18-152)||(17793402-17793536)
[»] chr1 (2 HSPs)
chr1 (18-149)||(26400916-26401047)
chr1 (330-388)||(42039863-42039921)


Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 9 - 388
Target Start/End: Complemental strand, 18011347 - 18010968
Alignment:
Q  9 gattatactgcagcggaggaacttcataatccttttcaacagcctcccaaacatccaaagcctccaggtaagactccattcttactgcccaaaggtcata 108  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  18011347 gattattctgcagcggaggaacttcataatcctcttcaacagcctcccaaacatccaaagcctccaggtaagactccattcttactgcccaaaggttata 18011248  T
Q  109 gttctccccatcaaagacaggaggagcaacttgtgagaaacttgtttcagtttccattttcacaggtcccgtaagatgatagctcgggtgccaatttgtt 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  18011247 gttctccccatcaaagacaggaggagcaacttgtgagaaacttgtttcagtttccattttcacaggccccgtaagatgatagctctggtgccaatttgtt 18011148  T
Q  209 ggttatatggtataaatgaaaaataatatgatagacagggaagaatacgttgaaatggaatgggaaattgatttattaatttcactaaaacaatacactt 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18011147 ggttatatggtataaatgaaaaataatatgatagacagggaagaatacgttgaaatggaatgggaaattgatttattaatttcactaaaacaatacactt 18011048  T
Q  309 aatagtgtttcacaaaacaaaacagaacacaactacatcaccactaaactaggaacgtgggataacaacaactgctttct 388  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  18011047 aatagtgtttcacaaaacaaaacagaacacaactacatcaccactaaactaggatcgtgggataacaacaactgctttct 18010968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 205 - 388
Target Start/End: Complemental strand, 18015363 - 18015180
Alignment:
Q  205 tgttggttatatggtataaatgaaaaataatatgatagacagggaagaatacgttgaaatggaatgggaaattgatttattaatttcactaaaacaatac 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18015363 tgttggttatatggtataaatgaaaaataatatgatagacagggaagaatacgttgaaatggaatgggaaattgatttattaatttcactaaaacaatac 18015264  T
Q  305 acttaatagtgtttcacaaaacaaaacagaacacaactacatcaccactaaactaggaacgtgggataacaacaactgctttct 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18015263 acttaatagtgtttcacaaaacaaaacagaacacaactacatcaccactaaactaggaacgtgggataacaacaactgctttct 18015180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 9 - 217
Target Start/End: Complemental strand, 43441805 - 43441597
Alignment:
Q  9 gattatactgcagcggaggaacttcataatccttttcaacagcctcccaaacatccaaagcctccaggtaagactccattcttactgcccaaaggtcata 108  Q
    |||||| | |||||||| |||||||| |||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  43441805 gattattcggcagcggaagaacttcaaaatcctcttcaacggcctcccaaacatccaaagcctctaggtaagactccattcttactgcccaaaggtcata 43441706  T
Q  109 gttctccccatcaaagacaggaggagcaacttgtgagaaacttgtttcagtttccattttcacaggtcccgtaagatgatagctcgggtgccaatttgtt 208  Q
    |||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| | | | ||||||||    
T  43441705 gttctccccatcaaagacgggaggagcaacatgtgacaaacttgtttcagtttccattttcacaggtcccgtaagatgatagctctgctactaatttgtt 43441606  T
Q  209 ggttatatg 217  Q
    |||| ||||    
T  43441605 ggttttatg 43441597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 9 - 388
Target Start/End: Complemental strand, 15537619 - 15537245
Alignment:
Q  9 gattatactgcagcggaggaacttcataatccttttcaacagcctcccaaacatccaaagcctccaggtaagactccattcttactgcccaaaggtcata 108  Q
    |||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||    
T  15537619 gattattctgcagcggaggaacttcataatcctcttcaacaacctcccaaacatccaaagcctccaagtatggctccattcttactgcccaaaggtcata 15537520  T
Q  109 gttctccccatcaaagacaggaggagcaacttgtgagaaacttgtttcagtttccattttcacaggtcccgtaagatgatagctcgggtgccaatttgtt 208  Q
    ||||||||||||||||||||||||||||||     | |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  15537519 gttctccccatcaaagacaggaggagcaac-----aaaaacttgtttcagttttcattttcacaggtcccgtaagatgatagctctggtgccaatttgtt 15537425  T
Q  209 ggttatatggtataaatgaaaaataatatgatagacagggaagaatacgttgaaatggaatgggaaattgatttattaatttcactaaaacaatacactt 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  15537424 ggttatatggtataaatgaaaaataatatgatagacagggaagaatacattgaaatggaatgggaaattgatatattaatttcactaaaacaatacactt 15537325  T
Q  309 aatagtgtttcacaaaacaaaacagaacacaactacatcaccactaaactaggaacgtgggataacaacaactgctttct 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15537324 aatagtgtttcacaaaacaaaacagaacacaactacatcaccactaaactaggaacgtgggataacaacaactgctttct 15537245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 205 - 388
Target Start/End: Original strand, 25322962 - 25323145
Alignment:
Q  205 tgttggttatatggtataaatgaaaaataatatgatagacagggaagaatacgttgaaatggaatgggaaattgatttattaatttcactaaaacaatac 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25322962 tgttggttatatggtataaatgaaaaataatatgatagacagggaagaatacgttgaaatggaatgggaaattgatttattaatttcactaaaacaatac 25323061  T
Q  305 acttaatagtgtttcacaaaacaaaacagaacacaactacatcaccactaaactaggaacgtgggataacaacaactgctttct 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25323062 acttaatagtgtttcacaaaacaaaacagaacacaactacatcaccactaaactaggaacgtgggataacaacaactgctttct 25323145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 9 - 217
Target Start/End: Complemental strand, 16937966 - 16937758
Alignment:
Q  9 gattatactgcagcggaggaacttcataatccttttcaacagcctcccaaacatccaaagcctccaggtaagactccattcttactgcccaaaggtcata 108  Q
    |||||| | ||||||||||||| | |||||||| |||||  ||||||||||||||||||||||| ||||||||||||||||||||| |||| | ||||||    
T  16937966 gattattcggcagcggaggaacattataatcctcttcaatggcctcccaaacatccaaagcctctaggtaagactccattcttacttcccacatgtcata 16937867  T
Q  109 gttctccccatcaaagacaggaggagcaacttgtgagaaacttgtttcagtttccattttcacaggtcccgtaagatgatagctcgggtgccaatttgtt 208  Q
    |||||||||||||||||  ||| ||||||| ||||||| | ||||||  |||||||||||||||||||||||||||||||||||| | | ||||||||||    
T  16937866 gttctccccatcaaagattggaagagcaacgtgtgagatatttgttttggtttccattttcacaggtcccgtaagatgatagctctgataccaatttgtt 16937767  T
Q  209 ggttatatg 217  Q
    |||| ||||    
T  16937766 ggttttatg 16937758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 9 - 149
Target Start/End: Complemental strand, 25428673 - 25428533
Alignment:
Q  9 gattatactgcagcggaggaacttcataatccttttcaacagcctcccaaacatccaaagcctccaggtaagactccattcttactgcccaaaggtcata 108  Q
    |||||| | |||| ||||||||||||||||| | ||| |  || |||||||| |||||||| || ||||||| ||||||| ||||||||||||| |||||    
T  25428673 gattattcggcagtggaggaacttcataatcttcttctatggcttcccaaacttccaaagcttctaggtaagcctccatttttactgcccaaagttcata 25428574  T
Q  109 gttctccccatcaaagacaggaggagcaacttgtgagaaac 149  Q
    ||| | ||||||||||| |||||||||||||| ||| ||||    
T  25428573 gttgttcccatcaaagagaggaggagcaacttttgaaaaac 25428533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 1541414 - 1541283
Alignment:
Q  18 gcagcggaggaacttcataatccttttcaacagcctcccaaacatccaaagcctccaggtaagactccattcttactgcccaaaggtcatagttctcccc 117  Q
    |||||||||||||||||||||||| ||| |  || |||||||| |||||||| || ||||||| ||||||| | || ||||||| ||||||||| | |||    
T  1541414 gcagcggaggaacttcataatcctcttctatggcttcccaaacgtccaaagcttctaggtaagcctccattttgacagcccaaatgtcatagttgttccc 1541315  T
Q  118 atcaaagacaggaggagcaacttgtgagaaac 149  Q
    |||||||| |||||||||||||| ||| ||||    
T  1541314 atcaaagagaggaggagcaacttttgaaaaac 1541283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 153; Significance: 6e-81; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 9 - 217
Target Start/End: Original strand, 35973068 - 35973276
Alignment:
Q  9 gattatactgcagcggaggaacttcataatccttttcaacagcctcccaaacatccaaagcctccaggtaagactccattcttactgcccaaaggtcata 108  Q
    |||||| | |||||||| |||||||| |||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  35973068 gattattcggcagcggaagaacttcacaatcctcttcaacggcctcccaaacatccaaagcctctaggtaagactccattcttactgcccaaaggtcata 35973167  T
Q  109 gttctccccatcaaagacaggaggagcaacttgtgagaaacttgtttcagtttccattttcacaggtcccgtaagatgatagctcgggtgccaatttgtt 208  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| | | ||||||||||    
T  35973168 gttctccccatcaaagacgggaggagcaacatgtgagaaacttgtttcagtttccattttcacaggtcctgtaagatgatagctctgctaccaatttgtt 35973267  T
Q  209 ggttatatg 217  Q
    |||| ||||    
T  35973268 ggttttatg 35973276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 9 - 217
Target Start/End: Original strand, 35994480 - 35994688
Alignment:
Q  9 gattatactgcagcggaggaacttcataatccttttcaacagcctcccaaacatccaaagcctccaggtaagactccattcttactgcccaaaggtcata 108  Q
    |||||| | |||||||| |||||||| |||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  35994480 gattattcggcagcggaagaacttcacaatcctcttcaacggcctcccaaacatccaaagcctctaggtaagactccattcttactgcccaaaggtcata 35994579  T
Q  109 gttctccccatcaaagacaggaggagcaacttgtgagaaacttgtttcagtttccattttcacaggtcccgtaagatgatagctcgggtgccaatttgtt 208  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| | | ||||||||||    
T  35994580 gttctccccatcaaagacgggaggagcaacatgtgagaaacttgtttcagtttccattttcacaggtcctgtaagatgatagctctgctaccaatttgtt 35994679  T
Q  209 ggttatatg 217  Q
    |||| ||||    
T  35994680 ggttttatg 35994688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 9 - 217
Target Start/End: Complemental strand, 8986139 - 8985931
Alignment:
Q  9 gattatactgcagcggaggaacttcataatccttttcaacagcctcccaaacatccaaagcctccaggtaagactccattcttactgcccaaaggtcata 108  Q
    |||||| | |||||||| ||||||||||||| | |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  8986139 gattattcggcagcggaagaacttcataatcatcttcaacggcctcccaaacatccaaagcctctaggtaagactccattcttactgcccaaaggtcata 8986040  T
Q  109 gttctccccatcaaagacaggaggagcaacttgtgagaaacttgtttcagtttccattttcacaggtcccgtaagatgatagctcgggtgccaatttgtt 208  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||  | | ||||||||||    
T  8986039 gttctccccatcaaagacgggaggagcaacatgtgagaaacttgtttcagtttccattttcacaggtcatgtaagatgatagctatgctaccaatttgtt 8985940  T
Q  209 ggttatatg 217  Q
    |||| ||||    
T  8985939 ggttttatg 8985931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 9 - 212
Target Start/End: Complemental strand, 43583020 - 43582817
Alignment:
Q  9 gattatactgcagcggaggaacttcataatccttttcaacagcctcccaaacatccaaagcctccaggtaagactccattcttactgcccaaaggtcata 108  Q
    |||||| | |||||||| ||||||||||||||| ||||||  |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  43583020 gattattcggcagcggaagaacttcataatcctcttcaacgacctcccaaacatccaaagcctctaggtaagactccattcttactgcctaaaggtcata 43582921  T
Q  109 gttctccccatcaaagacaggaggagcaacttgtgagaaacttgtttcagtttccattttcacaggtcccgtaagatgatagctcgggtgccaatttgtt 208  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||| | | ||||||||||    
T  43582920 gttctccccatcaaagacgggaggagcaacatgtgagaaacttgtttcagtttccattttcacaggtcctgtgagatgatagctctgataccaatttgtt 43582821  T
Q  209 ggtt 212  Q
    ||||    
T  43582820 ggtt 43582817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 153; Significance: 6e-81; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 9 - 217
Target Start/End: Complemental strand, 26254172 - 26253964
Alignment:
Q  9 gattatactgcagcggaggaacttcataatccttttcaacagcctcccaaacatccaaagcctccaggtaagactccattcttactgcccaaaggtcata 108  Q
    |||||| | |||||||| ||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  26254172 gattattcggcagcggaagaacttcataatcctcttcaacggcctcccaaacatccaaagcctctaggtaagactccattcttactgcccaaaggtcata 26254073  T
Q  109 gttctccccatcaaagacaggaggagcaacttgtgagaaacttgtttcagtttccattttcacaggtcccgtaagatgatagctcgggtgccaatttgtt 208  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||| | | ||||||||||    
T  26254072 gttctccccatcaaagacgggaggagcaacatgtgagaaacttgtttcagtttccattttcacaggtcctttaagatgatagctctgctaccaatttgtt 26253973  T
Q  209 ggttatatg 217  Q
    |||| ||||    
T  26253972 ggttttatg 26253964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 7034116 - 7033985
Alignment:
Q  18 gcagcggaggaacttcataatccttttcaacagcctcccaaacatccaaagcctccaggtaagactccattcttactgcccaaaggtcatagttctcccc 117  Q
    |||||||||||||||||||||||| ||| |  || |||||||| |||||||| || ||||||| ||||||| | || ||||||| ||||||||| | |||    
T  7034116 gcagcggaggaacttcataatcctcttctatggcttcccaaacgtccaaagcttctaggtaagcctccattttgacagcccaaatgtcatagttgttccc 7034017  T
Q  118 atcaaagacaggaggagcaacttgtgagaaac 149  Q
    |||||||| |||||||||||||| ||| ||||    
T  7034016 atcaaagagaggaggagcaacttttgaaaaac 7033985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 64 - 217
Target Start/End: Complemental strand, 2765743 - 2765590
Alignment:
Q  64 caaagcctccaggtaagactccattcttactgcccaaaggtcatagttctccccatcaaagacaggaggagcaacttgtgagaaacttgtttcagtttcc 163  Q
    ||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||  ||||||||||| ||| ||||||||||||||||||||    
T  2765743 caaagcctctaggtaagactccattcttactacctaaaggtcatagttctccccatcaaagatgggaggagcaacatgtaagaaacttgtttcagtttcc 2765644  T
Q  164 attttcacaggtcccgtaagatgatagctcgggtgccaatttgttggttatatg 217  Q
    |||||||||||||||||||||||||| ||| | | |||||||||||||| ||||    
T  2765643 attttcacaggtcccgtaagatgataactccgctaccaatttgttggttttatg 2765590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 9 - 140
Target Start/End: Original strand, 20334113 - 20334244
Alignment:
Q  9 gattatactgcagcggaggaacttcataatccttttcaacagcctcccaaacatccaaagcctccaggtaagactccattcttactgcccaaaggtcata 108  Q
    |||||| | |||| ||||||||||||||||||| ||| |  || ||||||||||||||||| || ||||||| ||| ||| ||||||||||||| |||||    
T  20334113 gattattcggcagtggaggaacttcataatcctcttctatggcttcccaaacatccaaagcttctaggtaagcctcaatttttactgcccaaagttcata 20334212  T
Q  109 gttctccccatcaaagacaggaggagcaactt 140  Q
    ||| | ||||||||||| |||||| |||||||    
T  20334213 gttgttcccatcaaagagaggaggggcaactt 20334244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 17793536 - 17793402
Alignment:
Q  18 gcagcggaggaacttcataatccttttcaacagcctcccaaacatccaaagcctccaggtaagactccattcttactgcccaaaggtcatagttctcccc 117  Q
    |||||||||||||||||||||||| ||| |  || |||||||| |||||||| || |||||||  |||||| | || ||||||| |||||| || | |||    
T  17793536 gcagcggaggaacttcataatcctcttctatggcttcccaaacgtccaaagcttctaggtaagcttccattttgacagcccaaatgtcataattgttccc 17793437  T
Q  118 atcaaagacaggaggagcaacttgtgagaaacttg 152  Q
    |||||||| |||||||||||||| ||| |||||||    
T  17793436 atcaaagagaggaggagcaacttttgaaaaacttg 17793402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 26401047 - 26400916
Alignment:
Q  18 gcagcggaggaacttcataatccttttcaacagcctcccaaacatccaaagcctccaggtaagactccattcttactgcccaaaggtcatagttctcccc 117  Q
    |||||||||||||||||||||||| ||| |  || |||||||| |||||||| || ||||||| ||||||| | || ||||||| ||||||||| | |||    
T  26401047 gcagcggaggaacttcataatcctcttctatggcttcccaaacgtccaaagcttctaggtaagcctccattttgacagcccaaatgtcatagttgttccc 26400948  T
Q  118 atcaaagacaggaggagcaacttgtgagaaac 149  Q
    |||||||| |||||||||||||| ||| ||||    
T  26400947 atcaaagagaggaggagcaacttttgaaaaac 26400916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 330 - 388
Target Start/End: Original strand, 42039863 - 42039921
Alignment:
Q  330 acagaacacaactacatcaccactaaactaggaacgtgggataacaacaactgctttct 388  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42039863 acagaacacaactacatcaccactaaactaggaacgtgggataacaacaactgctttct 42039921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University