View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14300_low_26 (Length: 396)

Name: NF14300_low_26
Description: NF14300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14300_low_26
NF14300_low_26
[»] chr2 (5 HSPs)
chr2 (121-257)||(28634240-28634376)
chr2 (122-257)||(41363474-41363609)
chr2 (126-257)||(44679390-44679521)
chr2 (122-251)||(11925256-11925385)
chr2 (130-202)||(7885410-7885482)
[»] chr4 (11 HSPs)
chr4 (120-257)||(55584606-55584743)
chr4 (122-257)||(53437444-53437579)
chr4 (122-257)||(53438877-53439012)
chr4 (127-257)||(46670803-46670933)
chr4 (122-257)||(16420666-16420800)
chr4 (121-251)||(9341538-9341668)
chr4 (122-251)||(9352640-9352769)
chr4 (121-251)||(6673066-6673196)
chr4 (127-250)||(42515084-42515199)
chr4 (143-246)||(987915-988020)
chr4 (259-296)||(55585393-55585430)
[»] chr7 (9 HSPs)
chr7 (122-257)||(9953568-9953703)
chr7 (122-257)||(23410104-23410240)
chr7 (122-245)||(25138090-25138213)
chr7 (122-251)||(30759064-30759193)
chr7 (122-257)||(23688245-23688380)
chr7 (122-251)||(7747905-7748034)
chr7 (130-245)||(42779220-42779333)
chr7 (157-246)||(28753830-28753921)
chr7 (129-165)||(45280145-45280181)
[»] scaffold0049 (2 HSPs)
scaffold0049 (256-385)||(38948-39077)
scaffold0049 (122-251)||(38164-38293)
[»] chr6 (10 HSPs)
chr6 (122-257)||(2867949-2868084)
chr6 (122-257)||(2880408-2880543)
chr6 (122-257)||(35024158-35024293)
chr6 (122-251)||(33354476-33354605)
chr6 (138-247)||(31472676-31472787)
chr6 (131-247)||(31499238-31499356)
chr6 (199-251)||(28872158-28872210)
chr6 (122-208)||(20026617-20026702)
chr6 (118-247)||(31513749-31513880)
chr6 (131-247)||(31493852-31493970)
[»] chr5 (2 HSPs)
chr5 (122-257)||(41586380-41586515)
chr5 (167-250)||(32484162-32484245)
[»] chr3 (7 HSPs)
chr3 (122-262)||(11773143-11773283)
chr3 (122-251)||(12678425-12678554)
chr3 (122-251)||(21222075-21222204)
chr3 (122-245)||(36530208-36530330)
chr3 (122-245)||(27088211-27088334)
chr3 (122-245)||(36533651-36533773)
chr3 (167-203)||(560196-560232)
[»] scaffold0434 (2 HSPs)
scaffold0434 (122-257)||(11591-11726)
scaffold0434 (285-370)||(10812-10898)
[»] scaffold0144 (1 HSPs)
scaffold0144 (122-257)||(39682-39817)
[»] scaffold0210 (1 HSPs)
scaffold0210 (120-251)||(22873-23004)
[»] scaffold0007 (2 HSPs)
scaffold0007 (122-257)||(276071-276202)
scaffold0007 (285-385)||(275278-275379)
[»] chr8 (11 HSPs)
chr8 (122-251)||(10333333-10333462)
chr8 (121-251)||(9330771-9330901)
chr8 (32-117)||(5568039-5568124)
chr8 (128-250)||(40455355-40455477)
chr8 (124-244)||(14647317-14647436)
chr8 (146-247)||(12104078-12104179)
chr8 (130-246)||(14663960-14664076)
chr8 (129-252)||(14641699-14641821)
chr8 (188-247)||(26180003-26180062)
chr8 (122-195)||(10236511-10236584)
chr8 (164-205)||(12071137-12071177)
[»] chr1 (3 HSPs)
chr1 (122-251)||(36216191-36216320)
chr1 (122-218)||(35765125-35765221)
chr1 (122-172)||(30440854-30440904)


Alignment Details
Target: chr2 (Bit Score: 133; Significance: 5e-69; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 121 - 257
Target Start/End: Complemental strand, 28634376 - 28634240
Alignment:
Q  121 atgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaata 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  28634376 atgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatattgtcgaata 28634277  T
Q  221 atatttataacttaattgaacaaaaaggtactgaatt 257  Q
    |||||||||||||||||||||||||||||||||||||    
T  28634276 atatttataacttaattgaacaaaaaggtactgaatt 28634240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 122 - 257
Target Start/End: Complemental strand, 41363609 - 41363474
Alignment:
Q  122 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||     
T  41363609 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagatcgagtgtcgaactcgaggatcgcgttatactgtcgaatat 41363510  T
Q  222 tatttataacttaattgaacaaaaaggtactgaatt 257  Q
    ||||||||||||||| ||||||||||||||| ||||    
T  41363509 tatttataacttaatcgaacaaaaaggtacttaatt 41363474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 126 - 257
Target Start/End: Original strand, 44679390 - 44679521
Alignment:
Q  126 agcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataatatt 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44679390 agcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaatagtatt 44679489  T
Q  226 tataacttaattgaacaaaaaggtactgaatt 257  Q
    ||||||||||||||||||||| || |||||||    
T  44679490 tataacttaattgaacaaaaatgtgctgaatt 44679521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 122 - 251
Target Start/End: Original strand, 11925256 - 11925385
Alignment:
Q  122 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 221  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11925256 tgatagcgattttcgcaagtgtacgaaatcgttcaagtagtaaatttaaaacggtaagaccgagtgtcgaactcaaggatcgcgttatactgtcgaataa 11925355  T
Q  222 tatttataacttaattgaacaaaaaggtac 251  Q
    || || | ||||||||||||||||||||||    
T  11925356 tacttgttacttaattgaacaaaaaggtac 11925385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 130 - 202
Target Start/End: Original strand, 7885410 - 7885482
Alignment:
Q  130 attttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatc 202  Q
    ||||| ||||||||||   |||||| |||||||||||||||||||||||||  |||||| |||||| ||||||    
T  7885410 atttttgcaagtgtacatgatcgtgtaagtagtaaaattaaaacggtaagattgagtgttgaactcaaggatc 7885482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 130; Significance: 3e-67; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 120 - 257
Target Start/End: Original strand, 55584606 - 55584743
Alignment:
Q  120 gatgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaat 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  55584606 gatgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaacgagtgtcgaactcgaggatcgcgttatactgtcgaat 55584705  T
Q  220 aatatttataacttaattgaacaaaaaggtactgaatt 257  Q
    | ||||||||||||||||||||||||||||||||||||    
T  55584706 agtatttataacttaattgaacaaaaaggtactgaatt 55584743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 122 - 257
Target Start/End: Complemental strand, 53437579 - 53437444
Alignment:
Q  122 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 221  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  53437579 tgatagcgattttcgcaagtgtacaaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaatag 53437480  T
Q  222 tatttataacttaattgaacaaaaaggtactgaatt 257  Q
    ||||||||||||||||||||||||||||||||||||    
T  53437479 tatttataacttaattgaacaaaaaggtactgaatt 53437444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 122 - 257
Target Start/End: Complemental strand, 53439012 - 53438877
Alignment:
Q  122 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 221  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  53439012 tgatagcgattttcgcaagtgtacaaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaatag 53438913  T
Q  222 tatttataacttaattgaacaaaaaggtactgaatt 257  Q
    ||||||||||||||||||||||||||||||||||||    
T  53438912 tatttataacttaattgaacaaaaaggtactgaatt 53438877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 127 - 257
Target Start/End: Original strand, 46670803 - 46670933
Alignment:
Q  127 gcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataatattt 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |  ||||||||||||||||||||||||||||||||||||    
T  46670803 gcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagatcgagtattaaactcgaggatcgcgttatactgtcgaataatattt 46670902  T
Q  227 ataacttaattgaacaaaaaggtactgaatt 257  Q
    |||||||||||||||||||||||||||||||    
T  46670903 ataacttaattgaacaaaaaggtactgaatt 46670933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 122 - 257
Target Start/End: Complemental strand, 16420800 - 16420666
Alignment:
Q  122 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 221  Q
    |||||||||||||||||||||||| ||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  16420800 tgatagcgattttcgcaagtgtacaaaatcgttcaagtagtaaatttaaa-cggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 16420702  T
Q  222 tatttataacttaattgaacaaaaaggtactgaatt 257  Q
    ||||| | ||||||||||||||||||||||||||||    
T  16420701 tatttgtgacttaattgaacaaaaaggtactgaatt 16420666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 121 - 251
Target Start/End: Original strand, 9341538 - 9341668
Alignment:
Q  121 atgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaata 220  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |    
T  9341538 atgatagcggttttcgcaagtgtacgaaatcgttcaagtagtaaatttaaaacggtaagaccgagtgtcgaactcaaggatcgcgttatactgtcgaaaa 9341637  T
Q  221 atatttataacttaattgaacaaaaaggtac 251  Q
    ||| || | ||||||||||||||||||||||    
T  9341638 atacttgttacttaattgaacaaaaaggtac 9341668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 122 - 251
Target Start/End: Original strand, 9352640 - 9352769
Alignment:
Q  122 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 221  Q
    |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  9352640 tgatagcggttttcgcaagtgtacgaaatcgttcaagtagtaaatttaaaacggtaagaccgagtgtcgaactcaaggatcgcgttatactgtcgaaaaa 9352739  T
Q  222 tatttataacttaattgaacaaaaaggtac 251  Q
    || || | ||||||||||||||||||||||    
T  9352740 tacttgttacttaattgaacaaaaaggtac 9352769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 121 - 251
Target Start/End: Original strand, 6673066 - 6673196
Alignment:
Q  121 atgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaata 220  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| || ||||| |||||||||||||||||||| || ||||||||||||||||||||     
T  6673066 atgatagcgattttcgcaagtgtacgaaatcgttcaagtagtaaattttaaacgttaagaccgagtgtcgaactcaagaatcgcgttatactgtcgaatg 6673165  T
Q  221 atatttataacttaattgaacaaaaaggtac 251  Q
    ||| || | ||||||||||||||||||||||    
T  6673166 atacttgttacttaattgaacaaaaaggtac 6673196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 127 - 250
Target Start/End: Original strand, 42515084 - 42515199
Alignment:
Q  127 gcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataatattt 226  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||| |||| ||||||        |||||||||    
T  42515084 gcgattttcgcaagtgtatgaaatcgtgcaagtagtaaaattaaaacggtaagactgagtctcgaactcgaagatctcgttat--------ataatattt 42515175  T
Q  227 ataacttaattgaacaaaaaggta 250  Q
     | |||||||||||||||||||||    
T  42515176 gtgacttaattgaacaaaaaggta 42515199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 143 - 246
Target Start/End: Complemental strand, 988020 - 987915
Alignment:
Q  143 tacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataatattt--ataacttaattgaa 240  Q
    |||||||||||  ||||||||||||||||||||||||| ||| ||||||||||||| ||| ||||||| ||||||||| |||||  |||| |||||||||    
T  988020 tacgaaatcgtataagtagtaaaattaaaacggtaagatcgaatgtcgaactcgagaatcacgttatattgtcgaatattatttacataatttaattgaa 987921  T
Q  241 caaaaa 246  Q
    ||||||    
T  987920 caaaaa 987915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 259 - 296
Target Start/End: Original strand, 55585393 - 55585430
Alignment:
Q  259 gttctcctctcgttttccaaccctcgtattcttctttt 296  Q
    |||||||||||| |||||||||||||||||||||||||    
T  55585393 gttctcctctcggtttccaaccctcgtattcttctttt 55585430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 128; Significance: 5e-66; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 122 - 257
Target Start/End: Original strand, 9953568 - 9953703
Alignment:
Q  122 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  9953568 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaatga 9953667  T
Q  222 tatttataacttaattgaacaaaaaggtactgaatt 257  Q
    ||||||||||||||||||||||||||||||| ||||    
T  9953668 tatttataacttaattgaacaaaaaggtactcaatt 9953703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 122 - 257
Target Start/End: Complemental strand, 23410240 - 23410104
Alignment:
Q  122 tgatagcgattttcgcaagtgtacgaaa-tcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaata 220  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23410240 tgatagcgattttcacaagtgtacgaaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaata 23410141  T
Q  221 atatttataacttaattgaacaaaaaggtactgaatt 257  Q
     |||||||||||||||||||||||||||| |||||||    
T  23410140 gtatttataacttaattgaacaaaaaggtcctgaatt 23410104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 122 - 245
Target Start/End: Complemental strand, 25138213 - 25138090
Alignment:
Q  122 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 221  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  25138213 tgatagcgattttcgtaagtgtacgaaatcgtgtaagtagtaaaattaaaacggtaagatcgagtgtcgaactcgaggatcgcgttatactgtcgaataa 25138114  T
Q  222 tatttataacttaattgaacaaaa 245  Q
    ||||||||||||||||||||||||    
T  25138113 tatttataacttaattgaacaaaa 25138090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 122 - 251
Target Start/End: Complemental strand, 30759193 - 30759064
Alignment:
Q  122 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 221  Q
    |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  30759193 tgatagcggttttcgcaagtgtacgaaatcgttcaagtagtaaatttaaaacggtaagaccgagtgtcgaactcaaggatcgcgttatactgtcgaataa 30759094  T
Q  222 tatttataacttaattgaacaaaaaggtac 251  Q
    || || | ||||||||||||||||||||||    
T  30759093 tacttgttacttaattgaacaaaaaggtac 30759064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 122 - 257
Target Start/End: Original strand, 23688245 - 23688380
Alignment:
Q  122 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 221  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| || |||| |||||||||||||||||    
T  23688245 tgatagcgattttcgcaagtgtacgaaatcgttcaagtagtaaatttaaaacggtaagaccgagtgtcaaactcaagaatcgtgttatactgtcgaataa 23688344  T
Q  222 tatttataacttaattgaacaaaaaggtactgaatt 257  Q
    || ||   ||||||||||||||||||||||||||||    
T  23688345 tacttgctacttaattgaacaaaaaggtactgaatt 23688380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 122 - 251
Target Start/End: Complemental strand, 7748034 - 7747905
Alignment:
Q  122 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 221  Q
    ||||| ||||||||||||||  ||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  7748034 tgataacgattttcgcaagttaacgaaattgtgcaagtagtaaaattaaatcggtaagaccgagtgtcgaactcgaagatcgtgttatactgtcgaataa 7747935  T
Q  222 tatttataacttaattgaacaaaaaggtac 251  Q
    || |  | |||||| |||||||||||||||    
T  7747934 tactcgttacttaagtgaacaaaaaggtac 7747905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 130 - 245
Target Start/End: Original strand, 42779220 - 42779333
Alignment:
Q  130 attttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataatatttata 229  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||| ||| | |||||| |||||  |||||||    
T  42779220 attttcgcaagtgtacgaaatcgtgcaagtagtaa--ttaaaacggtaagaccgagtatcgaactcgaggattgcggtttactgttgaataggatttata 42779317  T
Q  230 acttaattgaacaaaa 245  Q
    ||||||||||||||||    
T  42779318 acttaattgaacaaaa 42779333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 246
Target Start/End: Original strand, 28753830 - 28753921
Alignment:
Q  157 agtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaat--aatatttataacttaattgaacaaaaa 246  Q
    |||| |||||||||||||||||||   |||||| |||||||||| | | ||||||| || |||   |||||||||| ||||| |||||||||    
T  28753830 agtaataaaattaaaacggtaagattaagtgtcaaactcgaggaccacattatactatcaaattatatatttataatttaatagaacaaaaa 28753921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 165
Target Start/End: Original strand, 45280145 - 45280181
Alignment:
Q  129 gattttcgcaagtgtacgaaatcgtgcaagtagtaaa 165  Q
    ||||||| ||||||||||||||||| |||||||||||    
T  45280145 gattttcacaagtgtacgaaatcgttcaagtagtaaa 45280181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 126; Significance: 7e-65; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 256 - 385
Target Start/End: Original strand, 38948 - 39077
Alignment:
Q  256 ttcgttctcctctcgttttccaaccctcgtattcttcttttcttggcttttatacacgccctctatgatataagctcctccacgtgtgccaaatttttag 355  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38948 ttcgttctcctctcgttttccaaccctcgtattcttctttttttggcttttatacacgccctctatgatataagctcctccacgtgtgccaaatttttag 39047  T
Q  356 gctttctttactctcattcgctggaccttt 385  Q
    ||||||||||||||||||||||||||||||    
T  39048 gctttctttactctcattcgctggaccttt 39077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 122 - 251
Target Start/End: Original strand, 38164 - 38293
Alignment:
Q  122 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 221  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  38164 tgatagcgattttcgcaagtgtacgaaatcgttcaagtagtaaatttaaaacggtaagaccgagtgtcgaactcaaggatcgcgttatactgtcgaataa 38263  T
Q  222 tatttataacttaattgaacaaaaaggtac 251  Q
    || || | ||||||||||||||||||||||    
T  38264 tacttgttacttaattgaacaaaaaggtac 38293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 124; Significance: 1e-63; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 122 - 257
Target Start/End: Complemental strand, 2868084 - 2867949
Alignment:
Q  122 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2868084 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccaagtgtcgaactcgaggatcgcgttatactgtcgaataa 2867985  T
Q  222 tatttataacttaattgaacaaaaaggtactgaatt 257  Q
    ||||| | ||||||||||||||||||||||||||||    
T  2867984 tatttgtgacttaattgaacaaaaaggtactgaatt 2867949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 122 - 257
Target Start/End: Complemental strand, 2880543 - 2880408
Alignment:
Q  122 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 221  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2880543 tgatagcgattttcgccagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 2880444  T
Q  222 tatttataacttaattgaacaaaaaggtactgaatt 257  Q
    ||||| | ||||||||||||||||||||||||||||    
T  2880443 tatttgtgacttaattgaacaaaaaggtactgaatt 2880408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 122 - 257
Target Start/End: Complemental strand, 35024293 - 35024158
Alignment:
Q  122 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35024293 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 35024194  T
Q  222 tatttataacttaattgaacaaaaaggtactgaatt 257  Q
    ||||| | | |||||||||||||||| |||||||||    
T  35024193 tatttgtgatttaattgaacaaaaagttactgaatt 35024158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 122 - 251
Target Start/End: Complemental strand, 33354605 - 33354476
Alignment:
Q  122 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 221  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33354605 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtaataaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcaaataa 33354506  T
Q  222 tatttataacttaattgaacaaaaaggtac 251  Q
    ||||| | ||||||||||||||||||||||    
T  33354505 tatttgttacttaattgaacaaaaaggtac 33354476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 138 - 247
Target Start/End: Original strand, 31472676 - 31472787
Alignment:
Q  138 aagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataata---tttataactta 234  Q
    |||||||||||||||||||| ||||||| ||||||||| || | | ||||| |||||||||||  |||| ||| ||||||||  ||   |||| ||||||    
T  31472676 aagtgtacgaaatcgtgcaattagtaaagttaaaacgg-aaaaacaagtgttgaactcgaggactgcgtcatattgtcgaattgtatattttaaaactta 31472774  T
Q  235 attgaacaaaaag 247  Q
    |||||||||||||    
T  31472775 attgaacaaaaag 31472787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 247
Target Start/End: Original strand, 31499238 - 31499356
Alignment:
Q  131 ttttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataata---ttta 227  Q
    |||| |||||||||||||||| || || ||||||| ||||||||| || | | ||||| ||||||||||| ||||| ||| ||||||||  ||   ||||    
T  31499238 tttttgcaagtgtacgaaatcatgtaattagtaaagttaaaacgg-aaaaacaagtgttgaactcgaggaccgcgtcatattgtcgaattgtatatttta 31499336  T
Q  228 taacttaattgaacaaaaag 247  Q
     |||||||||||||||||||    
T  31499337 aaacttaattgaacaaaaag 31499356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 28872210 - 28872158
Alignment:
Q  199 gatcgcgttatactgtcgaataatatttataacttaattgaacaaaaaggtac 251  Q
    ||||||||||||||||||||| ||| || | ||||||||||||||||||||||    
T  28872210 gatcgcgttatactgtcgaatgatacttgttacttaattgaacaaaaaggtac 28872158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 208
Target Start/End: Complemental strand, 20026702 - 20026617
Alignment:
Q  122 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgtta 208  Q
    |||||||||||||  ||||||||||||||||| |||||||| ||||| |||||||||    ||||||| |||| |||| ||||||||    
T  20026702 tgatagcgatttttacaagtgtacgaaatcgtacaagtagt-aaatttaaacggtaactttgagtgtcaaacttgagggtcgcgtta 20026617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 247
Target Start/End: Original strand, 31513749 - 31513880
Alignment:
Q  118 aagatgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcga 217  Q
    ||||||||| ||||||| |||||||||| |||||||  || ||||||| ||||||||| || ||  ||||| |||||||||||  |||| ||| ||||||    
T  31513749 aagatgataccgatttttgcaagtgtacaaaatcgtataattagtaaagttaaaacggaaaaaca-agtgttgaactcgaggactgcgtcatattgtcga 31513847  T
Q  218 ataata---tttataacttaattgaacaaaaag 247  Q
    ||  ||   |||| ||||| |||||||||||||    
T  31513848 attgtatattttaaaactttattgaacaaaaag 31513880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 131 - 247
Target Start/End: Original strand, 31493852 - 31493970
Alignment:
Q  131 ttttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataata---ttta 227  Q
    |||| |||||||||||||||| || || ||||||| ||||||||| || | | ||||| |||||||||||  |||| ||| ||||||||  ||   ||||    
T  31493852 tttttgcaagtgtacgaaatcatgtaattagtaaagttaaaacgg-aaaaacaagtgttgaactcgaggactgcgtcatattgtcgaattgtatatttta 31493950  T
Q  228 taacttaattgaacaaaaag 247  Q
     |||||||||||||||||||    
T  31493951 aaacttaattgaacaaaaag 31493970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 122 - 257
Target Start/End: Complemental strand, 41586515 - 41586380
Alignment:
Q  122 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 221  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41586515 tgatagcgattttcgcaagtgtaagaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 41586416  T
Q  222 tatttataacttaattgaacaaaaaggtactgaatt 257  Q
    ||||| | ||||||||||||||||||||||||||||    
T  41586415 tatttttgacttaattgaacaaaaaggtactgaatt 41586380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 167 - 250
Target Start/End: Complemental strand, 32484245 - 32484162
Alignment:
Q  167 ttaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataatatttataacttaattgaacaaaaaggta 250  Q
    |||||| ||||||||||||||||||| | |||| |||||||||| ||||||||| |||||||||||||| | ||||||||||||    
T  32484245 ttaaaatggtaagaccgagtgtcgaatttgaggttcgcgttataatgtcgaatactatttataacttaactaaacaaaaaggta 32484162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 121; Significance: 7e-62; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 122 - 262
Target Start/End: Original strand, 11773143 - 11773283
Alignment:
Q  122 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 221  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||     
T  11773143 tgatagcgattttcgcaagtgtacgaaatcatgcaagtagtaaaattaaaacggtaagaccgagtgtggaactcgaggatcgtgttatactgtcgaatag 11773242  T
Q  222 tatttataacttaattgaacaaaaaggtactgaattcgttc 262  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  11773243 tatttataacttaattgaacaaaaaggtactgaatttgttc 11773283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 122 - 251
Target Start/End: Original strand, 12678425 - 12678554
Alignment:
Q  122 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  12678425 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagatcgagtgtcgaactcgaggatcgcgttatactgtcgaataa 12678524  T
Q  222 tatttataacttaattgaacaaaaaggtac 251  Q
    || || | ||||||||||||||||||||||    
T  12678525 tacttgttacttaattgaacaaaaaggtac 12678554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 122 - 251
Target Start/End: Complemental strand, 21222204 - 21222075
Alignment:
Q  122 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 221  Q
    ||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  21222204 tgataacgattttcgcaagtgtacgaaatcgttcaagtagtaaatttaaaacggtaagatcgagtgtcgaactcaaggatcgcgttatactgtcgaataa 21222105  T
Q  222 tatttataacttaattgaacaaaaaggtac 251  Q
    || || | ||||||||||||||||||||||    
T  21222104 tacttgttacttaattgaacaaaaaggtac 21222075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 122 - 245
Target Start/End: Complemental strand, 36530330 - 36530208
Alignment:
Q  122 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 221  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| | || ||| |||||     
T  36530330 tgatggcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaat-aaaacggtaagaccgagtgtcgaactcgaggattgcggtttaatgttgaatag 36530232  T
Q  222 tatttataacttaattgaacaaaa 245  Q
     |||||| ||||||||||||||||    
T  36530231 aatttatgacttaattgaacaaaa 36530208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 122 - 245
Target Start/End: Original strand, 27088211 - 27088334
Alignment:
Q  122 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 221  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||  |||||| ||||||| ||||  |||||||| | |||||     
T  27088211 tgatagcgattttcgctactgtacgaaatcgtgcaagtagtaaaattaaaacggtaagacacagtgtcaaactcgaagatcatgttatactattgaatag 27088310  T
Q  222 tatttataacttaattgaacaaaa 245  Q
    | ||||||||||||||||||||||    
T  27088311 tgtttataacttaattgaacaaaa 27088334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 122 - 245
Target Start/End: Complemental strand, 36533773 - 36533651
Alignment:
Q  122 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 221  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| | || ||  |||||     
T  36533773 tgatggcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaat-aaaacggtaagaccgagtgtcgaactcgaggattgcggtttaatgatgaatag 36533675  T
Q  222 tatttataacttaattgaacaaaa 245  Q
     |||||| ||||||||||||||||    
T  36533674 aatttatgacttaattgaacaaaa 36533651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 560232 - 560196
Alignment:
Q  167 ttaaaacggtaagaccgagtgtcgaactcgaggatcg 203  Q
    ||||||||||||||||||||||||||||| |||||||    
T  560232 ttaaaacggtaagaccgagtgtcgaactcaaggatcg 560196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 122 - 257
Target Start/End: Complemental strand, 11726 - 11591
Alignment:
Q  122 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 221  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||     
T  11726 tgatagcgattttcgtaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagatcgagtgtcgaactcgaggatcgcgttataccgtcgaatag 11627  T
Q  222 tatttataacttaattgaacaaaaaggtactgaatt 257  Q
    ||||||||||||||||||||||||||||||||||||    
T  11626 tatttataacttaattgaacaaaaaggtactgaatt 11591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 285 - 370
Target Start/End: Complemental strand, 10898 - 10812
Alignment:
Q  285 tattcttctttt-cttggcttttatacacgccctctatgatataagctcctccacgtgtgccaaatttttaggctttctttactctc 370  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10898 tattcttcttttacttggcttttatacacgccctctatgatataagctcctccacgtgtgccaaatttttaggctttctttactctc 10812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 122 - 257
Target Start/End: Original strand, 39682 - 39817
Alignment:
Q  122 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 221  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||     
T  39682 tgatagcgattttcgcaaatgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggattgcgttatactctcgaatag 39781  T
Q  222 tatttataacttaattgaacaaaaaggtactgaatt 257  Q
    ||||||||||||||||||||||||||||||||||||    
T  39782 tatttataacttaattgaacaaaaaggtactgaatt 39817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 120 - 251
Target Start/End: Original strand, 22873 - 23004
Alignment:
Q  120 gatgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaat 219  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  22873 gatgctagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacagtaagatcgagtgtcgaactcgaggatcgcgttatactgtcgaat 22972  T
Q  220 aatatttataacttaattgaacaaaaaggtac 251  Q
    |||| || | ||||||||||||||||||||||    
T  22973 aatacttgttacttaattgaacaaaaaggtac 23004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 103; Significance: 4e-51; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 122 - 257
Target Start/End: Complemental strand, 276202 - 276071
Alignment:
Q  122 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 221  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    |    
T  276202 tgatagtgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtttcgaactcgaggatcgcgttatattgtcg----a 276107  T
Q  222 tatttataacttaattgaacaaaaaggtactgaatt 257  Q
    |||||||||||||||||||||||||||||| |||||    
T  276106 tatttataacttaattgaacaaaaaggtaccgaatt 276071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 285 - 385
Target Start/End: Complemental strand, 275379 - 275278
Alignment:
Q  285 tattcttctttt-cttggcttttatacacgccctctatgatataagctcctccacgtgtgccaaatttttaggctttctttactctcattcgctggacct 383  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||    
T  275379 tattcttcttttacttagcttttatacacgccctctatgatataagctcctccacgtcttccaaatttttaggctttctttactctcattcactggacct 275280  T
Q  384 tt 385  Q
    ||    
T  275279 tt 275278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 4e-48; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 122 - 251
Target Start/End: Complemental strand, 10333462 - 10333333
Alignment:
Q  122 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 221  Q
    |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  10333462 tgatagcggttttcgcaagtgtacgaaatcgttcaagtagtaaatttaaaacggtaagaccgagtgtcgaactcaaggatcgcgttatactgtcgaaaaa 10333363  T
Q  222 tatttataacttaattgaacaaaaaggtac 251  Q
    || || | ||||||||||||||||||||||    
T  10333362 tacttgttacttaattgaacaaaaaggtac 10333333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 121 - 251
Target Start/End: Complemental strand, 9330901 - 9330771
Alignment:
Q  121 atgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaata 220  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||| ||||     
T  9330901 atgatagcgattttcgcaagtgtacgaaatcgttcaagtagtaaatttaaaacggtaagagcgagtgtcgaactcaaggatcgcgttatactgttgaatg 9330802  T
Q  221 atatttataacttaattgaacaaaaaggtac 251  Q
    ||| ||   ||||||||||||||||||||||    
T  9330801 atacttgagacttaattgaacaaaaaggtac 9330771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 32 - 117
Target Start/End: Complemental strand, 5568124 - 5568039
Alignment:
Q  32 ctttataataaactagcagaaacagtgaaacacagacactgattgttcattattttattagaggaaagctagttttagagtattgt 117  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5568124 ctttataataaactagcagaaacagggaaacacagacactgattgttcattattttattagaggaaagctagttttagagcattgt 5568039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 128 - 250
Target Start/End: Complemental strand, 40455477 - 40455355
Alignment:
Q  128 cgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataatattta 227  Q
    ||||||| ||||||||| |||||| |||||| ||||||||||||||||| |||| |||||| || ||||||||||| |||||||| || |||||||||||    
T  40455477 cgatttttgcaagtgtatgaaatcatgcaagcagtaaaattaaaacggtgagactgagtgtagagctcgaggatcgtgttatactatcaaataatattta 40455378  T
Q  228 taacttaattgaacaaaaaggta 250  Q
    | |||||| | ||||||||||||    
T  40455377 tgacttaactaaacaaaaaggta 40455355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 124 - 244
Target Start/End: Original strand, 14647317 - 14647436
Alignment:
Q  124 atagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataata 223  Q
    ||||| |||||||||||||| ||||||| || ||||||||||||||||| ||||| ||||||||| |||||||||||| |||||||||| ||||||||||    
T  14647317 atagcaattttcgcaagtgttcgaaatcatgaaagtagtaaaattaaaatggtaaaaccgagtgt-gaactcgaggattgcgttatactatcgaataata 14647415  T
Q  224 tttataacttaattgaacaaa 244  Q
     |||||  |||||||| ||||    
T  14647416 attatattttaattgatcaaa 14647436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 146 - 247
Target Start/End: Complemental strand, 12104179 - 12104078
Alignment:
Q  146 gaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataatatttataacttaattgaacaaaa 245  Q
    |||||||||||| |||||||||||||| ||||||||||||| || ||||||||||||| |||||||| | ||||||||||| |||| ||| | |||||||    
T  12104179 gaaatcgtgcaattagtaaaattaaaatggtaagaccgagtatcaaactcgaggatcgtgttatactcttgaataatatttttaacataactaaacaaaa 12104080  T
Q  246 ag 247  Q
    ||    
T  12104079 ag 12104078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 130 - 246
Target Start/End: Complemental strand, 14664076 - 14663960
Alignment:
Q  130 attttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataatatttata 229  Q
    ||||||| |||||| |||||||||| || |||||||||||||| | |||||| ||||||| |||||||||| ||||||||||| | ||||||||||||||    
T  14664076 attttcgtaagtgttcgaaatcgtgaaaatagtaaaattaaaatgataagactgagtgtc-aactcgaggaccgcgttatactcttgaataatatttata 14663978  T
Q  230 -acttaattgaacaaaaa 246  Q
     | ||||||||| |||||    
T  14663977 tatttaattgaagaaaaa 14663960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 129 - 252
Target Start/End: Original strand, 14641699 - 14641821
Alignment:
Q  129 gattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataatatttat 228  Q
    |||||||| |||||| | |||| ||| || |||||||||||||| |||||||||||||||| |||||||| | || |||||||||  |||||||||||||    
T  14641699 gattttcgtaagtgttcaaaattgtgaaaatagtaaaattaaaatggtaagaccgagtgtc-aactcgagtaccgtgttatactgatgaataatatttat 14641797  T
Q  229 aacttaattgaacaaaaaggtact 252  Q
    |  |||| |||| |||||| ||||    
T  14641798 attttaaatgaagaaaaagttact 14641821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 26180003 - 26180062
Alignment:
Q  188 tcgaactcgaggatcgcgttatactgtcgaataatatttataacttaattgaacaaaaag 247  Q
    |||||||||||||||  ||||||||||||||||||| ||||||||||| |||||||||||    
T  26180003 tcgaactcgaggatcatgttatactgtcgaataatacttataacttaactgaacaaaaag 26180062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 122 - 195
Target Start/End: Complemental strand, 10236584 - 10236511
Alignment:
Q  122 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactc 195  Q
    ||||| |||||||| |||||||||||||| || |||||  |||||||||||| |||||||| | |||| |||||    
T  10236584 tgataacgattttcacaagtgtacgaaattgtacaagttataaaattaaaacagtaagaccaaatgtcaaactc 10236511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 12071137 - 12071177
Alignment:
Q  164 aaattaaaacggtaagaccgagtgtcgaactcgaggatcgcg 205  Q
    ||||||||||||||||||||||||||  ||||||||||||||    
T  12071137 aaattaaaacggtaagaccgagtgtc-cactcgaggatcgcg 12071177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 9e-46; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 122 - 251
Target Start/End: Complemental strand, 36216320 - 36216191
Alignment:
Q  122 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 221  Q
    ||||| || ||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  36216320 tgataacggttttcgcaagtgtacgaaatcgttcaagtagtaaatttaaaacggtaataccgagtgtcgaactcaaggatcgcgttatactgtcgaataa 36216221  T
Q  222 tatttataacttaattgaacaaaaaggtac 251  Q
    || || | ||||||||||||||||||||||    
T  36216220 tacttgttacttaattgaacaaaaaggtac 36216191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 122 - 218
Target Start/End: Original strand, 35765125 - 35765221
Alignment:
Q  122 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaa 218  Q
    ||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||| || ||||| ||| | ||||||||||    
T  35765125 tgatagcgattttcgcaagtgtacgaaatcgggcaagtggtaaacttaaaacggtaagaccgagtgtcgaattcaaggattgcgatgtactgtcgaa 35765221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 30440854 - 30440904
Alignment:
Q  122 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaa 172  Q
    ||||| ||||||| |||| ||||| ||||||||||||||| ||||||||||    
T  30440854 tgataacgatttttgcaaatgtacaaaatcgtgcaagtagcaaaattaaaa 30440904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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