View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14300_low_29 (Length: 364)
Name: NF14300_low_29
Description: NF14300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14300_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-100; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 94 - 345
Target Start/End: Complemental strand, 34377775 - 34377523
Alignment:
| Q |
94 |
aacggtgtgtttcataaaagaagttgattggataaaaaa-tttgatgtgtgatagtgtactaagaaggaaaaagttataataattcatacctcacaccaa |
192 |
Q |
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| T |
34377775 |
aacggtgtgtttcataaaagaagttgcttggataaaaaaatttgatgtgtgatagtgtactaagaaggagaaagttgtaataattcatacctcacaccaa |
34377676 |
T |
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| Q |
193 |
acacacaatcatttattctgtcgttgtatcacttcattaacatcttcatctttgtcaaatttggtattttctacataaatctct-tcaagacctggagtg |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||| ||| | || |||||||||| |
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| T |
34377675 |
acacacaatcatttattctgtcgttgtatcacttcattaacatcttcatctatgtcaaatttggtatcttctacacaaat-tctataaatacctggagtg |
34377577 |
T |
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| Q |
292 |
tataagattccttcgtaccaaaaggtcttcatctctggacagtcattaattagt |
345 |
Q |
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|| |||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
34377576 |
tacaagattccattgtaccaaaaggtcttcatctctggacagtcattaattagt |
34377523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 165 - 343
Target Start/End: Original strand, 34549677 - 34549855
Alignment:
| Q |
165 |
agttataataattcatacctcacaccaaacacacaatcatttattctgtcgttgtatcacttcattaacatcttcatctttgtcaaatttggtattttct |
264 |
Q |
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| T |
34549677 |
agttgtaataattcatacctcacaccaaacactcaatcatttattctgtcgttgtatcacttcattaacatcttcatctttgtcaaatttagtattttct |
34549776 |
T |
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| Q |
265 |
acataaatctcttcaagacctggagtgtataagattccttcgtaccaaaaggtcttcatctctggacagtcattaatta |
343 |
Q |
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| T |
34549777 |
acataaatctcttcaagacctggagtgtataagattccttcgtaccaaaaggtcttcatctctgggcagtcattaatta |
34549855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 34377872 - 34377810
Alignment:
| Q |
1 |
agaatgggaagggaaaatgaatgaaggaaataatgtgtagctagcttctagacagtgctgttg |
63 |
Q |
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| T |
34377872 |
agaatgggaagggaaaatgaatgaaggaaataatgtgtagctagcttctagacagtgctgttg |
34377810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 179 - 335
Target Start/End: Complemental strand, 135193 - 135038
Alignment:
| Q |
179 |
atacctcacaccaaacacacaatcatttattctgtcgttgtatcacttcattaacatcttcatctttgtcaaatttggtattttctacataaatctcttc |
278 |
Q |
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|||||||| ||||| ||| | |||||||||| |||||||||||||| |||||||||||||| | || ||||||||||||||||| || | |||| || | |
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| T |
135193 |
atacctcataccaa-cactcgatcatttattgtgtcgttgtatcacgtcattaacatcttcgtattcgtcaaatttggtattttttaaagaaatttcata |
135095 |
T |
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| Q |
279 |
aagacctggagtgtataagattccttcgtaccaaaaggtcttcatctctggacagtc |
335 |
Q |
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||||| ||| |||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
135094 |
aagacgtggggtgtataagattccttcgaaccaaaaggtcttcatctctgggcagtc |
135038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 6111162 - 6111193
Alignment:
| Q |
1 |
agaatgggaagggaaaatgaatgaaggaaata |
32 |
Q |
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| T |
6111162 |
agaatgggaagggaaaatgaatgaaggaaata |
6111193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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