View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14300_low_3 (Length: 738)
Name: NF14300_low_3
Description: NF14300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14300_low_3 |
 |  |
|
| [»] scaffold0687 (1 HSPs) |
 |  |  |
|
| [»] scaffold0050 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr3 (Bit Score: 627; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 8 - 674
Target Start/End: Original strand, 39336774 - 39337440
Alignment:
| Q |
8 |
cagcagagactattctgactaacgaagtccgcaatcaaaaactattttaaaattttaatacattaattggacttttgtgcttagtcattacacattcaaa |
107 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
39336774 |
cagcagagattattctgactaacgaagtccgcaatcaaaaactattttaaaattttaatatattaattggacttttgtggttagtaattacacattcaaa |
39336873 |
T |
 |
| Q |
108 |
gatcaaaagtgactgttactccaatttataactattgatgtgataataaaagctatagaaataataaattgaaaacagaaaataatattcatatgatatt |
207 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39336874 |
gatcaaaagtgacggttactccaatttataactattgatgtgataataaaagatatagaaataataaattgaaaacagaaaataatattcatatgatatt |
39336973 |
T |
 |
| Q |
208 |
tatttatagagttttggacaacaaaagatttctagataacatttctccatatatcacttttaacacatttaccataaaataatattttatgaaaatttgc |
307 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
39336974 |
tatttatagagttttagacaacaaaaaatttctagataacatttctccatatatcacttttaacacatttcccataaaataatattttatgaaaatttgc |
39337073 |
T |
 |
| Q |
308 |
gatcaagacccccacatcacatggcacatgttctgttttcacacacaactgatgagaagagaacagtgacttttcatgagttaaatttgtagtactctta |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39337074 |
gatcaagacccccacatcacatggcacatgttctgttttcacacacaactgatgagaagagaacagtgacttttcatgagttaaatttgtagtactctta |
39337173 |
T |
 |
| Q |
408 |
cttttataactatgatgatgatgagcccacctcacacgtgtttttgtcgttttagaaaaattgggtcccatttgtattgtttaactttgtcagtgggctc |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39337174 |
cttttataactatgatgatgatgagcccacctcacacgtgtttttgtcgttttagaaaaattgggtcccatttgtattgtttaactttgtcagtgggctc |
39337273 |
T |
 |
| Q |
508 |
caccagtcagtgatgacgagtaatgggtcctacttttatgctgaatctgtctttccctcccatccatgcctgcctgtcactggtcggcatctgtttcaga |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39337274 |
caccagtcagtgatgacgagtaatgggtcctacttttatgctgaatctgtctttccctcccatccatgcctgcctgtcactggtcggcatctgtttcaga |
39337373 |
T |
 |
| Q |
608 |
aaagacctcgttgaattgagcacatacacatctatctagcttaacattgttataaatgataaattag |
674 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39337374 |
aaagaccttgttgaattgagcacatacacatctatctagcttaacattgttataaatgataaattag |
39337440 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 672 - 723
Target Start/End: Original strand, 39338384 - 39338432
Alignment:
| Q |
672 |
tagtttcttgctaagtagtagtaatagatttgttaattcatattaaaaaatt |
723 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39338384 |
tagtttcttgctaagta---gtaatagatttgttaattcatattaaaaaatt |
39338432 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 43838546 - 43838490
Alignment:
| Q |
15 |
gactattctgactaacgaagtccgcaatcaaaaactattttaaaattttaatacatt |
71 |
Q |
| |
|
||||||| |||||||| |||| | ||||||| |||||||||||||||||||||||| |
|
|
| T |
43838546 |
gactattatgactaacaaagtacaaaatcaaagactattttaaaattttaatacatt |
43838490 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 47944547 - 47944603
Alignment:
| Q |
15 |
gactattctgactaacgaagtccgcaatcaaaaactattttaaaattttaatacatt |
71 |
Q |
| |
|
||||||| ||| ||||||||| | |||||||| ||||||||||||||| |||||||| |
|
|
| T |
47944547 |
gactattttgattaacgaagtgcacaatcaaagactattttaaaatttcaatacatt |
47944603 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 6788475 - 6788540
Alignment:
| Q |
6 |
agcagcagagactattctgactaacgaagtccgcaatcaaaaactattttaaaattttaatacatt |
71 |
Q |
| |
|
|||| |||||||||||||||||||| |||| | |||||| |||||||||||||||||| ||||||| |
|
|
| T |
6788475 |
agcatcagagactattctgactaacaaagtgcacaatcagaaactattttaaaattttgatacatt |
6788540 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 19206496 - 19206558
Alignment:
| Q |
11 |
cagagactattctgactaacgaagtccgcaatcaaaaactattttaaaattttaatacattaa |
73 |
Q |
| |
|
|||||| |||| |||||||| |||| | ||||| |||||||||||||||||| ||||||||| |
|
|
| T |
19206496 |
cagagaatattttgactaacaaagtgcataatcagaaactattttaaaattttgatacattaa |
19206558 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 20966212 - 20966262
Alignment:
| Q |
13 |
gagactattctgactaacgaagtccgcaatcaaaaactattttaaaatttt |
63 |
Q |
| |
|
||||||||| |||||||| |||| | |||||||| |||||||||||||||| |
|
|
| T |
20966212 |
gagactattttgactaacaaagtgcacaatcaaagactattttaaaatttt |
20966262 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 2687038 - 2686986
Alignment:
| Q |
14 |
agactattctgactaacgaagtccgcaatcaaaaactattttaaaattttaata |
67 |
Q |
| |
|
|||||||| ||||||||||||| ||||||| ||||||||| |||||||| |||| |
|
|
| T |
2687038 |
agactatt-tgactaacgaagtgcgcaatcgaaaactattataaaatttgaata |
2686986 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 8929559 - 8929501
Alignment:
| Q |
15 |
gactattctgactaacgaagtccgcaatcaaaaactattttaaaattttaatacattaa |
73 |
Q |
| |
|
||||||| |||||||| |||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
8929559 |
gactattttgactaacaaagtgcaaaatcaaaaactattttaaaattttaatacattaa |
8929501 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 23474614 - 23474559
Alignment:
| Q |
16 |
actattctgactaacgaagtccgcaatcaaaaactattttaaaattttaatacatt |
71 |
Q |
| |
|
|||||| ||| ||||||||| | ||||||| ||||||||||||||||| ||||||| |
|
|
| T |
23474614 |
actattttgattaacgaagtgcacaatcaataactattttaaaattttgatacatt |
23474559 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 23532952 - 23532906
Alignment:
| Q |
16 |
actattctgactaacgaagtccgcaatcaaaaactattttaaaattt |
62 |
Q |
| |
|
|||||| ||| ||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
23532952 |
actattttgattaacgaagtccacaatcaataactattttaaaattt |
23532906 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 7616951 - 7617009
Alignment:
| Q |
15 |
gactattctgactaacgaagtccgcaatcaaaaactattttaaaattttaatacattaa |
73 |
Q |
| |
|
||||||| |||||||| |||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
7616951 |
gactattttgactaacaaagtgcaaaatcaaaaactattttaaaattttaatacattaa |
7617009 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 39331171 - 39331221
Alignment:
| Q |
23 |
tgactaacgaagtccgcaatcaaaaactattttaaaattttaatacattaa |
73 |
Q |
| |
|
|||| |||||||| | |||||||||||||||||||||||| |||||||||| |
|
|
| T |
39331171 |
tgacaaacgaagtgcacaatcaaaaactattttaaaatttcaatacattaa |
39331221 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 32123882 - 32123827
Alignment:
| Q |
16 |
actattctgactaacgaagtccgcaatcaaaaactattttaaaattttaatacatt |
71 |
Q |
| |
|
|||||| | ||||||||||| | ||||||| |||||||||||||||||||||||| |
|
|
| T |
32123882 |
actattttaactaacgaagtacaaaatcaaagactattttaaaattttaatacatt |
32123827 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 32934139 - 32934194
Alignment:
| Q |
16 |
actattctgactaacgaagtccgcaatcaaaaactattttaaaattttaatacatt |
71 |
Q |
| |
|
|||||| |||||| | |||| | ||||||||||||||||||||||||| ||||||| |
|
|
| T |
32934139 |
actattttgactagcaaagtgcacaatcaaaaactattttaaaattttgatacatt |
32934194 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 23716654 - 23716604
Alignment:
| Q |
12 |
agagactattctgactaacgaagtccgcaatcaaaaactattttaaaattt |
62 |
Q |
| |
|
|||||||||| | |||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
23716654 |
agagactattttaactaacagagtgcgcaatcaaaaactattttaaaattt |
23716604 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 40836891 - 40836953
Alignment:
| Q |
11 |
cagagactattctgactaacgaagtccgcaatcaaaaactattttaaaattttaatacattaa |
73 |
Q |
| |
|
||||||||||| |||||||| || | ||||||| |||||||||||||||||||||||||| |
|
|
| T |
40836891 |
cagagactattttgactaacacggtacacaatcaatgactattttaaaattttaatacattaa |
40836953 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0687 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0687
Description:
Target: scaffold0687; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 1688 - 1629
Alignment:
| Q |
12 |
agagactattctgactaacgaagtccgcaatcaaaaactattttaaaattttaatacatt |
71 |
Q |
| |
|
|||||||||| |||| |||||||| | |||||||||| |||||||||||||| ||||||| |
|
|
| T |
1688 |
agagactattttgaccaacgaagtgcacaatcaaaaattattttaaaattttgatacatt |
1629 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 7604004 - 7603945
Alignment:
| Q |
12 |
agagactattctgactaacgaagtccgcaatcaaaaactattttaaaattttaatacatt |
71 |
Q |
| |
|
|||||||||| |||| |||||||| | |||||||||| |||||||||||||| ||||||| |
|
|
| T |
7604004 |
agagactattttgaccaacgaagtgcacaatcaaaaattattttaaaattttgatacatt |
7603945 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 4586857 - 4586800
Alignment:
| Q |
16 |
actattctgactaacgaagtccgcaatcaaaaactattttaaaattttaatacattaa |
73 |
Q |
| |
|
|||||| ||||||||||||| | ||||| | |||||||||||||||||||||||||| |
|
|
| T |
4586857 |
actattttgactaacgaagtgcaaaatcatagactattttaaaattttaatacattaa |
4586800 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 6915537 - 6915599
Alignment:
| Q |
39 |
caatcaaaaactattttaaaattttaatacattaattggacttttgtgcttagtcattacacatt |
103 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||| ||||| ||||| ||| | |||||||||| |
|
|
| T |
6915537 |
caatcaaaaattattttaaaattttgatacattaa--ggactattgtgattacttattacacatt |
6915599 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 25085082 - 25085141
Alignment:
| Q |
14 |
agactattctgactaacgaagtccgcaatcaaaaactattttaaaattttaatacattaa |
73 |
Q |
| |
|
|||||||| |||||||| |||| | |||||||||| |||||||||||||| ||||||||| |
|
|
| T |
25085082 |
agactattttgactaacaaagtgcacaatcaaaaagtattttaaaattttgatacattaa |
25085141 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 73
Target Start/End: Original strand, 30000002 - 30000036
Alignment:
| Q |
39 |
caatcaaaaactattttaaaattttaatacattaa |
73 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |
|
|
| T |
30000002 |
caatcaaaaactattttaaaattttaataccttaa |
30000036 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 73
Target Start/End: Original strand, 31315304 - 31315338
Alignment:
| Q |
39 |
caatcaaaaactattttaaaattttaatacattaa |
73 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |
|
|
| T |
31315304 |
caatcaaagactattttaaaattttaatacattaa |
31315338 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 72
Target Start/End: Original strand, 9762635 - 9762668
Alignment:
| Q |
39 |
caatcaaaaactattttaaaattttaatacatta |
72 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |
|
|
| T |
9762635 |
caatcaaaaactattttaaaattttgatacatta |
9762668 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 42525297 - 42525235
Alignment:
| Q |
11 |
cagagactattctgactaacgaagtccgcaatcaaaaactattttaaaattttaatacattaa |
73 |
Q |
| |
|
|||| |||||| ||||||| ||||||| |||||||||| |||||||||||| | ||||||||| |
|
|
| T |
42525297 |
cagaaactattttgactaatgaagtccacaatcaaaaattattttaaaattatgatacattaa |
42525235 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 37853448 - 37853504
Alignment:
| Q |
12 |
agagactattctgactaacgaagtccgcaatcaaaaactattttaaaattttaatac |
68 |
Q |
| |
|
|||||||||| |||||||| |||| |||| ||||||||||||||||||||||||| |
|
|
| T |
37853448 |
agagactattttgactaacaaagtatacaattaaaaactattttaaaattttaatac |
37853504 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 51849552 - 51849608
Alignment:
| Q |
15 |
gactattctgactaacgaagtccgcaatcaaaaactattttaaaattttaatacatt |
71 |
Q |
| |
|
||||||| ||||||| ||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
51849552 |
gactattttgactaaagaagtgtacaatcacaaactattttaaaattttaatacatt |
51849608 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 31415048 - 31415110
Alignment:
| Q |
11 |
cagagactattctgactaacgaagtccgcaatcaaaaactattttaaaattttaatacattaa |
73 |
Q |
| |
|
||||||||||| | || || ||||| | |||||||| ||||||||||||||| |||||||||| |
|
|
| T |
31415048 |
cagagactattttaaccaatgaagtacacaatcaaatactattttaaaatttaaatacattaa |
31415110 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 10018971 - 10019016
Alignment:
| Q |
23 |
tgactaacgaagtccgcaatcaaaaactattttaaaattttaatac |
68 |
Q |
| |
|
||||||| ||||| | ||||||||||||||||||||||||| |||| |
|
|
| T |
10018971 |
tgactaaagaagtacacaatcaaaaactattttaaaatttttatac |
10019016 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 68
Target Start/End: Complemental strand, 45679588 - 45679559
Alignment:
| Q |
39 |
caatcaaaaactattttaaaattttaatac |
68 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
45679588 |
caatcaaaaactattttaaaattttaatac |
45679559 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 45679736 - 45679793
Alignment:
| Q |
15 |
gactattctgactaacgaagtccgcaatcaaaaactattttaaaattttaatacatta |
72 |
Q |
| |
|
||||||| ||||||||||| | | |||||| ||||||||||||||||| |||||||| |
|
|
| T |
45679736 |
gactattttgactaacgaattgcacaatcatgaactattttaaaatttttatacatta |
45679793 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 81403 - 81349
Alignment:
| Q |
15 |
gactattctgactaacgaagtccgcaatcaaaaactattttaaaattttaataca |
69 |
Q |
| |
|
||||||| ||||||||||||| | |||||| |||||||||| |||||| |||||| |
|
|
| T |
81403 |
gactattttgactaacgaagtgcacaatcataaactattttgaaatttcaataca |
81349 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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