View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14300_low_36 (Length: 275)
Name: NF14300_low_36
Description: NF14300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14300_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 41932283 - 41932540
Alignment:
| Q |
1 |
gattgtattatcttagtcttactgtaatgagaaatatcaatgaaccgaactagttaagcttttagtgcacctagctagaacctttcttgatcctgatcat |
100 |
Q |
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| T |
41932283 |
gattgtattatcttagtcttactgtaatgagaaatatcaatgaaccgaactagttaagcttttagtgcacctagctagaacctttcttgatcctgatcat |
41932382 |
T |
|
| Q |
101 |
ggctgcagtagctgttggtgaagcatttctgtcagctttcattgaagttgtccttgacaggcttgcttctcctgaggttattgacttgatacgtgggaag |
200 |
Q |
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| T |
41932383 |
ggctgcagtagctgttggtgaagcatttctgtcagctttcattgaagttgtccttgacaggcttgcttctcctgaggttattgacttgatacgtgggaag |
41932482 |
T |
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| Q |
201 |
aaagttgacgtcaatttgatccaaaggttgaagaacactctttatgctgttgaagctg |
258 |
Q |
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| T |
41932483 |
aaagttgacgtcaatttgatccaaaggttgaagaacactctttatgctgttgaagctg |
41932540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 33549301 - 33549369
Alignment:
| Q |
135 |
gctttcattgaagttgtccttgacaggcttgcttctcctgaggttattgacttgatacgtgggaagaaa |
203 |
Q |
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| T |
33549301 |
gctttcattggagttgtccttgacatacttacttctcttgaggttgttgacttgatccgtgggaagaaa |
33549369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 135 - 203
Target Start/End: Complemental strand, 33354103 - 33354035
Alignment:
| Q |
135 |
gctttcattgaagttgtccttgacaggcttgcttctcctgaggttattgacttgatacgtgggaagaaa |
203 |
Q |
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| T |
33354103 |
gctttcattggagttgtccttgacatactcacttctcttgaggttgttgacttgatccgtgggaagaaa |
33354035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 84 - 258
Target Start/End: Original strand, 4252946 - 4253120
Alignment:
| Q |
84 |
ttcttgatcctgatcatggctgcagtagctgttggtgaagcatttctgtcagctttcattgaagttgtccttgacaggcttgcttctcctgaggttattg |
183 |
Q |
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| T |
4252946 |
ttcttgatcgtgatcatggcagtggcggctgtaggtgaagcatttctgtctgctttcattgaagttgtcctcgacaggctcgcttctcctgaggttgttg |
4253045 |
T |
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| Q |
184 |
acttgatacgtgggaagaaagttgacgtcaatttgatccaaaggttgaagaacactctttatgctgttgaagctg |
258 |
Q |
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| T |
4253046 |
tcttgatccgtgggaagaaagttgacgtcaatttggtccaaaggttgaagaacactctttatgctgtggaagctg |
4253120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 113 - 258
Target Start/End: Complemental strand, 4315525 - 4315380
Alignment:
| Q |
113 |
tgttggtgaagcatttctgtcagctttcattgaagttgtccttgacaggcttgcttctcctgaggttattgacttgatacgtgggaagaaagttgacgtc |
212 |
Q |
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| T |
4315525 |
tgttggtgaagcttttttgtctgctttcattgaagttgtccttgacaagctttcttctcctgaggttgttgacttgatccgtgggaagaaagttgccgtc |
4315426 |
T |
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| Q |
213 |
aatttgatccaaaggttgaagaacactctttatgctgttgaagctg |
258 |
Q |
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| T |
4315425 |
aatttgatccaaaggttgaagaacactctttatgctgttgaagctg |
4315380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 117 - 258
Target Start/End: Complemental strand, 4306659 - 4306518
Alignment:
| Q |
117 |
ggtgaagcatttctgtcagctttcattgaagttgtccttgacaggcttgcttctcctgaggttattgacttgatacgtgggaagaaagttgacgtcaatt |
216 |
Q |
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| T |
4306659 |
ggtgaatcatttctgtccgctttcattgaagttgtcctcgacaggcttgcttctcctgaggttgttgacttgatccgtgggaagaaagttgacgtcaact |
4306560 |
T |
|
| Q |
217 |
tgatccaaaggttgaagaacactctttatgctgttgaagctg |
258 |
Q |
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|| | ||||||||||||||||||||||||||||||||||||| |
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| T |
4306559 |
tggttcaaaggttgaagaacactctttatgctgttgaagctg |
4306518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 94 - 258
Target Start/End: Complemental strand, 4309560 - 4309396
Alignment:
| Q |
94 |
tgatcatggctgcagtagctgttggtgaagcatttctgtcagctttcattgaagttgtccttgacaggcttgcttctcctgaggttattgacttgatacg |
193 |
Q |
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| T |
4309560 |
tgatcatggctgctgcagctgttggtgaagcttttctatctttattaattgaagttgtccttgacaggctggcttctcctcaggttcttgacttcatcca |
4309461 |
T |
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| Q |
194 |
tgggaagaaagttgacgtcaatttgatccaaaggttgaagaacactctttatgctgttgaagctg |
258 |
Q |
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| T |
4309460 |
tgggaaaaaagtttacatcaatttggttcaaaggttgaataacactctttatgctgtggaagctg |
4309396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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