View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14300_low_38 (Length: 264)
Name: NF14300_low_38
Description: NF14300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14300_low_38 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 52341109 - 52340861
Alignment:
| Q |
1 |
tgtcataaatattgaacgaattcctcattttcaatgccaataaatctataaaagtatctcgtccatagtttgtagggacattgtgacatacaagggttgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
52341109 |
tgtcataaatattgaacgaattcctcattttcaatgtcaataaatctataaaagtatctcgtccatagtttgtagggacattgtgacatacaagggtcag |
52341010 |
T |
|
| Q |
101 |
ggtttgaaccctgaatttctcacttattcactttcagggagaatatttaatcgctaggctacttgattaaaaataaaaactataagagnnnnnnnnatta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
52341009 |
ggtttgaaccctgaatttctcacttattcactttcagggtgaatatttaatcgctaggctacttgattaaaaataaaaactat--------tttttatta |
52340918 |
T |
|
| Q |
201 |
aaataaaagtatctattttaatataaataaccaaacaatcatttaaacattcatctc |
257 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
52340917 |
aaataaaagtatctattttaatataagtaaccaaacaatcatttaaacattcatctc |
52340861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 1361044 - 1360863
Alignment:
| Q |
1 |
tgtcataaatattgaacgaattcctcattttcaatgccaataaatctataaaagtatctcgtccatagtttgtagggacattgtgacatacaagggttgg |
100 |
Q |
| |
|
|||||||| | ||||| || || ||||||||||||||||||||| |||||||| |||||||||| | || ||||| |||||| || |||||||||| | |
|
|
| T |
1361044 |
tgtcataatttttgaatgattttctcattttcaatgccaataaaactataaaa-tatctcgtccgcaattggtaggaacattgcgatatacaagggtcga |
1360946 |
T |
|
| Q |
101 |
ggtttgaaccctgaatttctcacttattcactttcagggagaatatttaatcgctaggctacttgattaaaaataaaaactat |
183 |
Q |
| |
|
||||| ||||| ||||| ||||| ||||||| || |||| ||||||||| || || |||||| |||||||||||||||||| |
|
|
| T |
1360945 |
ggtttaaaccccgaattcctcacatattcaccttaagggtgaatatttagtcattaaactacttaattaaaaataaaaactat |
1360863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 257
Target Start/End: Complemental strand, 1360823 - 1360764
Alignment:
| Q |
198 |
ttaaaataaaagtatctattttaatataaataaccaaacaatcatttaaacattcatctc |
257 |
Q |
| |
|
|||| |||||||| ||||||| |||||| |||||||||||| ||||||| ||||||||| |
|
|
| T |
1360823 |
ttaatataaaagtgtctatttctatataagtaaccaaacaattatttaaatattcatctc |
1360764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 252
Target Start/End: Complemental strand, 10629829 - 10629570
Alignment:
| Q |
5 |
ataaatattgaacgaattcctcattttcaatgccaataaatctataaaagtatctcgtccatagtttgtagggacattgtgacatacaagggttggggtt |
104 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||| ||||||||||||||| |||| ||||| ||||||||||| || ||| |||||| || | | |
|
|
| T |
10629829 |
ataaatattgaac-atttcctcattttcaatgccaataaaactataaaagtatctcctccacagtttctagggacattgcgatatataagggtcggaggt |
10629731 |
T |
|
| Q |
105 |
tgaaccctgaatttctcacttattcact--------ttcagggagaatatttaatcgctaggctacttgattaaaaataaaaactataag---agnnnnn |
193 |
Q |
| |
|
|||||| ||||| |||||| |||||| || ||| ||||||||| || |||| |||||||||||||||||||||||| || |
|
|
| T |
10629730 |
tgaacctcgaattcttcacttgttcactttaaatccttaaggatgaatatttagtcattaggttacttgattaaaaataaaaactatgagtttttttttt |
10629631 |
T |
|
| Q |
194 |
nnnattaaaataaaagtatctattttaatataaa--taaccaaacaatcatttaaacattc |
252 |
Q |
| |
|
|||| |||||||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
10629630 |
tttgttaatataaaagtatctatttcaatataaaagtaaccaaacaatcatttaaacattc |
10629570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 203 - 254
Target Start/End: Complemental strand, 32162100 - 32162049
Alignment:
| Q |
203 |
ataaaagtatctattttaatataaataaccaaacaatcatttaaacattcat |
254 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
32162100 |
ataaaagtatctcttttaatataaataatcaaacaatcatttaaacattcat |
32162049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 203 - 257
Target Start/End: Original strand, 4451273 - 4451327
Alignment:
| Q |
203 |
ataaaagtatctattttaatataaataaccaaacaatcatttaaacattcatctc |
257 |
Q |
| |
|
|||||||||| |||||||| || ||||| ||||||||||||||||| |||||||| |
|
|
| T |
4451273 |
ataaaagtatttattttaacatgaataatcaaacaatcatttaaactttcatctc |
4451327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 256
Target Start/End: Complemental strand, 55359653 - 55359599
Alignment:
| Q |
202 |
aataaaagtatctattttaatataaataaccaaacaatcatttaaacattcatct |
256 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||| ||||| ||||||||| |
|
|
| T |
55359653 |
aataaaagtatcatttttaatatatgtaaccaaacaatcgtttaatcattcatct |
55359599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 10983310 - 10983266
Alignment:
| Q |
203 |
ataaaagtatctattttaatataaataaccaaacaatcatttaaa |
247 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
10983310 |
ataaaagtatccattttaatataaataattgaacaatcatttaaa |
10983266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University