View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14300_low_40 (Length: 262)
Name: NF14300_low_40
Description: NF14300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14300_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 10 - 247
Target Start/End: Original strand, 37113389 - 37113626
Alignment:
| Q |
10 |
atcatcagaaagagtgtatagtgagggtaagagaaagtacctgcaaccggaatttccacagcaaattctgtataacaaaacaccgatagcaaagcagata |
109 |
Q |
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| T |
37113389 |
atcataagaaagagtgtatagtgagggtaagagaaagtacctgcaaccggaatttccacagcaaattctgtataacaaaacaccgatagcaaagcagata |
37113488 |
T |
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| Q |
110 |
taccggagatgacaaacgacaatacaactgccggacctgcttcctgcctagcctcaagtccggtaagcacaaatattccagaaccaatgacggcgcccat |
209 |
Q |
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| T |
37113489 |
taccggagatgacaaacgacaatacaactgccggacctgcttcctgcctagcctcaagtccggtaagcacaaatattccagaaccaatgacggcgcccat |
37113588 |
T |
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| Q |
210 |
accgaaccacatcaagtcccaccaattcagtgtcttct |
247 |
Q |
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| T |
37113589 |
accgaaccacatcaagtcccaccaattcagtgtcttct |
37113626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 26 - 247
Target Start/End: Original strand, 37126143 - 37126364
Alignment:
| Q |
26 |
tatagtgagggtaagagaaagtacctgcaaccggaatttccacagcaaattctgtataacaaaacaccgatagcaaagcagatataccggagatgacaaa |
125 |
Q |
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| T |
37126143 |
tatagtgagaataagagaaagtacctgcaaccggaatttccaccgcaaactctgtatagcaaaatactgataacaaagcagatatgccggagatgacaaa |
37126242 |
T |
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| Q |
126 |
cgacaatacaactgccggacctgcttcctgcctagcctcaagtccggtaagcacaaatattccagaaccaatgacggcgcccataccgaaccacatcaag |
225 |
Q |
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| T |
37126243 |
tgacaacacaactgccggacctgcatgctgcttagcctcaagtccggtcagcacaaatattccggagccgacgaccgcaccgataccaaaccacatcaag |
37126342 |
T |
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| Q |
226 |
tcccaccaattcagtgtcttct |
247 |
Q |
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| T |
37126343 |
tcccaccagttcagcgtcttct |
37126364 |
T |
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