View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14300_low_42 (Length: 257)
Name: NF14300_low_42
Description: NF14300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14300_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 5 - 241
Target Start/End: Original strand, 39354567 - 39354803
Alignment:
| Q |
5 |
gaaaataatctactataactgtttcaggagaaacaaagcacttatcaaagaactgagtgctccagcaccttgttcaaaagatctttattttccttcacag |
104 |
Q |
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|||||||||||||||||| |||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
39354567 |
gaaaataatctactataattgtttcaggataaacaaagcacttgtcaaagaattgagtgctccagcaccttgttcaaaagatctctattttccttcacag |
39354666 |
T |
|
| Q |
105 |
tactcgagatccttttttacacaatgtatgacctgcttatggaaacaacattggtcttattggcgcaatcctgaatataatgccataagatttctctact |
204 |
Q |
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|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39354667 |
tactcgagatccttttttacacaatgtatggcttgcttatggaaacaacattggtcttattggcgcaatcctgaatataatgccataagatttctgtact |
39354766 |
T |
|
| Q |
205 |
caaccgcagtggctattttgctaggaagcatgttttg |
241 |
Q |
| |
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||||||| |||||| ||||||| |||||||||||||| |
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| T |
39354767 |
caaccgccgtggctgttttgcttggaagcatgttttg |
39354803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 39367164 - 39367404
Alignment:
| Q |
1 |
actagaaaataatctactataactgtttcaggagaaacaaagcacttatcaaagaactgagtgctccagcaccttgttcaaaagatctttattttccttc |
100 |
Q |
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|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39367164 |
actagaaaataatctactacaactgtttcaggagaaacaaagcacttatcaaagaactgagtgctccagcaccttgttcaaaagatctctattttccttc |
39367263 |
T |
|
| Q |
101 |
acagtactcgagatccttttttacacaatgtatgacctgcttatggaaacaacattggtcttattggcgcaatcctgaatataatgccataagatttctc |
200 |
Q |
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|| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39367264 |
acggtactcgagatccttctttacacaatgtatagcctgcttatggaaacaacattggtcttattggcgcaatcctgaatataatgccataagatttctg |
39367363 |
T |
|
| Q |
201 |
tactcaaccgcagtggctattttgctaggaagcatgttttg |
241 |
Q |
| |
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|| ||||| || |||||| ||||||| |||||||||||||| |
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| T |
39367364 |
tattcaactgcggtggctgttttgcttggaagcatgttttg |
39367404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 14 - 241
Target Start/End: Original strand, 39339755 - 39339982
Alignment:
| Q |
14 |
ctactataactgtttcaggagaaacaaagcacttatcaaagaactgagtgctccagcaccttgttcaaaagatctttattttccttcacagtactcgaga |
113 |
Q |
| |
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||||||||| |||||||||| |||||||||||||||||| ||| || || |||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
39339755 |
ctactataattgtttcaggataaacaaagcacttatcaaggaattgggtagtccagcaccttgttcaaaagatctttattttcctactcagtactcgaga |
39339854 |
T |
|
| Q |
114 |
tccttttttacacaatgtatgacctgcttatggaaacaacattggtcttattggcgcaatcctgaatataatgccataagatttctctactcaaccgcag |
213 |
Q |
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||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
39339855 |
tccttttttacacaatgtatggcttgcttatggaaacaacattggtcttattggcgcaatcctgaatataatgccataagatttctgtactcaaccgcag |
39339954 |
T |
|
| Q |
214 |
tggctattttgctaggaagcatgttttg |
241 |
Q |
| |
|
||||| |||||||||||||||||||||| |
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|
| T |
39339955 |
tggctgttttgctaggaagcatgttttg |
39339982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 4 - 241
Target Start/End: Complemental strand, 39563254 - 39563017
Alignment:
| Q |
4 |
agaaaataatctactataactgtttcaggagaaacaaagcacttatcaaagaactgagtgctccagcaccttgttcaaaagatctttattttccttcaca |
103 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||| ||||||| |
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| T |
39563254 |
agaaaataatctactataactgttttaggagaaacaaagcacttatcaaagaattgagtactccagcaccttgttcgaaagatctttattttgcttcaca |
39563155 |
T |
|
| Q |
104 |
gtactcgagatccttttttacacaatgtatgacctgcttatggaaacaacattggtcttattggcgcaatcctgaatataatgccataagatttctctac |
203 |
Q |
| |
|
||||||||||||||||| |||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
39563154 |
gtactcgagatccttttggacacaatgcatggcttgcttatggaaacaacattggtcttattggcgcaatcctgaatataatgccattagatttctgtac |
39563055 |
T |
|
| Q |
204 |
tcaaccgcagtggctattttgctaggaagcatgttttg |
241 |
Q |
| |
|
||||||||||| ||| ||||| | |||||||||||||| |
|
|
| T |
39563054 |
tcaaccgcagttgctgttttgtttggaagcatgttttg |
39563017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 5 - 241
Target Start/End: Complemental strand, 39537145 - 39536909
Alignment:
| Q |
5 |
gaaaataatctactataactgtttcaggagaaacaaagcacttatcaaagaactgagtgctccagcaccttgttcaaaagatctttattttccttcacag |
104 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||| |||||||| |
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| T |
39537145 |
gaaaataatctactacaactgtttcaggagaaacaaagcacttatcaaagaattgagtactccagcaccttgttcgaaagatctttattttacttcacag |
39537046 |
T |
|
| Q |
105 |
tactcgagatccttttttacacaatgtatgacctgcttatggaaacaacattggtcttattggcgcaatcctgaatataatgccataagatttctctact |
204 |
Q |
| |
|
|||||||||||||||| |||||||||||| | || || ||||||||||||||||| || ||||||||||||| ||| | ||||||||||||| | |||| |
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|
| T |
39537045 |
tactcgagatccttttggacacaatgtatggcttgtttgtggaaacaacattggtcctactggcgcaatcctgtatacactgccataagatttatgtact |
39536946 |
T |
|
| Q |
205 |
caaccgcagtggctattttgctaggaagcatgttttg |
241 |
Q |
| |
|
| ||||| || ||| || |||| |||| ||||||||| |
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| T |
39536945 |
cgaccgcggtagctgttatgcttggaaccatgttttg |
39536909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 24 - 241
Target Start/End: Complemental strand, 39546441 - 39546224
Alignment:
| Q |
24 |
tgtttcaggagaaacaaagcacttatcaaagaactgagtgctccagcaccttgttcaaaagatctttattttccttcacagtactcgagatcctttttta |
123 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||| ||||| ||||||| || |||| ||||||||||||||| |||||||||||||||||||||||| | |
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|
| T |
39546441 |
tgtttcaggagaaacaaaacacttatcgaagaattgagtactccagcttctggttcgaaagatctttattttacttcacagtactcgagatccttttgga |
39546342 |
T |
|
| Q |
124 |
cacaatgtatgacctgcttatggaaacaacattggtcttattggcgcaatcctgaatataatgccataagatttctctactcaaccgcagtggctatttt |
223 |
Q |
| |
|
||||||||||| | || ||||||||||||||||||||||| ||||||||||||| ||| | ||||||||||||||| ||||||||| | || ||| |||| |
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|
| T |
39546341 |
cacaatgtatggcttgtttatggaaacaacattggtcttactggcgcaatcctgtatacactgccataagatttctgtactcaacctccgtagctgtttt |
39546242 |
T |
|
| Q |
224 |
gctaggaagcatgttttg |
241 |
Q |
| |
|
||| |||| ||||||||| |
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|
| T |
39546241 |
gcttggaaccatgttttg |
39546224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 26 - 241
Target Start/End: Complemental strand, 1083746 - 1083531
Alignment:
| Q |
26 |
tttcaggagaaacaaagcacttatcaaagaactgagtgctccagcaccttgttcaaaagatctttattttccttcacagtactcgagatccttttttaca |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||||| || |||||| ||||||||||||| |||||||||||||||||||||||| ||| |
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|
| T |
1083746 |
tttcaggagaaacaaagcacttatcaaagaattgagtactccagcttctggttcaagagatctttattttacttcacagtactcgagatccttttggaca |
1083647 |
T |
|
| Q |
126 |
caatgtatgacctgcttatggaaacaacattggtcttattggcgcaatcctgaatataatgccataagatttctctactcaaccgcagtggctattttgc |
225 |
Q |
| |
|
||||| ||| | || ||||||||||||||||||||||| ||||||||||||| ||| | ||||||||||||||| ||| ||| ||| || |||||||||| |
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| T |
1083646 |
caatgcatggcttgtttatggaaacaacattggtcttactggcgcaatcctgtatacactgccataagatttctgtacacaatcgcggtagctattttgc |
1083547 |
T |
|
| Q |
226 |
taggaagcatgttttg |
241 |
Q |
| |
|
| || | ||||||||| |
|
|
| T |
1083546 |
ttgggaccatgttttg |
1083531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 30 - 201
Target Start/End: Complemental strand, 39588274 - 39588103
Alignment:
| Q |
30 |
aggagaaacaaagcacttatcaaagaactgagtgctccagcaccttgttcaaaagatctttattttccttcacagtactcgagatccttttttacacaat |
129 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||| ||||||| |||| |||||| || |||| |||||||||| ||||||| || ||||| | |||| |
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|
| T |
39588274 |
aggagaaacaaagctcttattcaagaattgagcactccagctcctttttcaaatgaactttgttttccttcaaagtactctaggtccttcgctgtccaat |
39588175 |
T |
|
| Q |
130 |
gtatgacctgcttatggaaacaacattggtcttattggcgcaatcctgaatataatgccataagatttctct |
201 |
Q |
| |
|
|||||| || ||||||||||||||||||||||| |||||||| ||| || ||||||||||| ||||||| |
|
|
| T |
39588174 |
ttatgacttgtttatggaaacaacattggtcttactggcgcaaccctctgtacaatgccataaggtttctct |
39588103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 87 - 175
Target Start/End: Complemental strand, 39573710 - 39573622
Alignment:
| Q |
87 |
ctttattttccttcacagtactcgagatccttttttacacaatgtatgacctgcttatggaaacaacattggtcttattggcgcaatcc |
175 |
Q |
| |
|
|||||||||||||| |||| ||||| |||||||||| ||||||||| | || ||||||||||||||||||||||| ||||||||||| |
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|
| T |
39573710 |
ctttattttccttcgaagtattcgaggtccttttttatccaatgtatggcttgtttatggaaacaacattggtcttactggcgcaatcc |
39573622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 201
Target Start/End: Complemental strand, 39620993 - 39620930
Alignment:
| Q |
138 |
tgcttatggaaacaacattggtcttattggcgcaatcctgaatataatgccataagatttctct |
201 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||| ||| ||||| |||||||||||| |
|
|
| T |
39620993 |
tgcttatggaaacaacattggtcttactggcggaatccgcgatacaatgcattaagatttctct |
39620930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 172
Target Start/End: Original strand, 2888192 - 2888226
Alignment:
| Q |
138 |
tgcttatggaaacaacattggtcttattggcgcaa |
172 |
Q |
| |
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||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2888192 |
tgcttatggaaacaacattggtcatattggcgcaa |
2888226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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