View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14300_low_43 (Length: 256)
Name: NF14300_low_43
Description: NF14300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14300_low_43 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 39547585 - 39547357
Alignment:
| Q |
1 |
gcaagaaacctttgcaagaatttcaggatactgtgagcaaactgatatccattctcctcatgttactgtctatgaatctttgctctattcagcatggctc |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39547585 |
gcaagatacctttgcaagaatttcaggatactgtgagcaaactgatatccattctcctcatgttactgtctatgaatctttgctctattcagcatggctc |
39547486 |
T |
|
| Q |
101 |
cgattgtccccagacatcaatgctgaaaccagaaaggttagtattttaatcacttgagattttaccattcattggaattattatgtttaagtttgaaaat |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
39547485 |
cgattgtcccctgacatcaatgctgaaaccagaaaggttagtattttaatcacttgagattttaccattcattggaattattatgttaaagtttgaaaat |
39547386 |
T |
|
| Q |
201 |
gacttatgcttaaagatgttcattgagga |
229 |
Q |
| |
|
||||||||||| |||||||||||||||| |
|
|
| T |
39547385 |
gacttatgcttgtagatgttcattgagga |
39547357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 39338736 - 39338964
Alignment:
| Q |
1 |
gcaagaaacctttgcaagaatttcaggatactgtgagcaaactgatatccattctcctcatgttactgtctatgaatctttgctctattcagcatggctc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39338736 |
gcaagaaacctttgcaagaatttctggatactgtgagcaaactgatatccattctcctcatgttactgtctatgaatctttgctctattcagcatggctc |
39338835 |
T |
|
| Q |
101 |
cgattgtccccagacatcaatgctgaaaccagaaaggttagtattttaatcacttgagattttaccattcattggaattattatgtttaagtttgaaaat |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||| |
|
|
| T |
39338836 |
cgattgtcccctgacatcaatgctgaaaccagaaaggttagtattttaatcacttgagattttaccattaactggaattattaagtttaagtttgaaaat |
39338935 |
T |
|
| Q |
201 |
gacttatgcttaaagatgttcattgagga |
229 |
Q |
| |
|
||||||||||| ||||||||||||||||| |
|
|
| T |
39338936 |
gacttatgcttgaagatgttcattgagga |
39338964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 39353579 - 39353807
Alignment:
| Q |
1 |
gcaagaaacctttgcaagaatttcaggatactgtgagcaaactgatatccattctcctcatgttactgtctatgaatctttgctctattcagcatggctc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
39353579 |
gcaagaaacctttgcaagaatttctggatactgtgagcaaactgatatccattctccttatgttactgtctatgaatctttgctctatccaacatggctc |
39353678 |
T |
|
| Q |
101 |
cgattgtccccagacatcaatgctgaaaccagaaaggttagtattttaatcacttgagattttaccattcattggaattattatgtttaagtttgaaaat |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39353679 |
cggttgtccccagacatcaatgctgaaaccagaaaggttagtactttaatcacttgagattttaccattcattggaattattatgtttaagtttgaaaat |
39353778 |
T |
|
| Q |
201 |
gacttatgcttaaagatgttcattgagga |
229 |
Q |
| |
|
||||||| ||| ||||||||| ||||||| |
|
|
| T |
39353779 |
gacttatacttgaagatgttcgttgagga |
39353807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 1084921 - 1084694
Alignment:
| Q |
1 |
gcaagaaacctttgcaagaatttcaggatactgtgagcaaactgatatccattctcctcatgttactgtctatgaatctttgctctattcagcatggctc |
100 |
Q |
| |
|
||||||||| ||| |||||||||| |||||||||||||||| |||||||||||||||||| |||||||||| || |||||||||||||||||||||||| |
|
|
| T |
1084921 |
gcaagaaacatttacaagaatttctggatactgtgagcaaatagatatccattctcctcattttactgtctacgagtctttgctctattcagcatggctc |
1084822 |
T |
|
| Q |
101 |
cgattgtccccagacatcaatgctgaaaccagaaaggttagtattttaatcacttgagattttaccattcattggaattattatgtttaagtttgaaaat |
200 |
Q |
| |
|
|||||| || | ||||| |||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||| |||||| ||||||| |||| |
|
|
| T |
1084821 |
cgattgacctcggacattaatgctgaaaccaggaaggttagcattttaatcaattgagattttaccattcattggaattactatgttaaagtttg-aaat |
1084723 |
T |
|
| Q |
201 |
gacttatgcttaaagatgttcattgagga |
229 |
Q |
| |
|
|| ||||||||| |||||||||||||||| |
|
|
| T |
1084722 |
gaattatgcttatagatgttcattgagga |
1084694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 39538127 - 39537963
Alignment:
| Q |
1 |
gcaagaaacctttgcaagaatttcaggatactgtgagcaaactgatatccattctcctcatgttactgtctatgaatctttgctctattcagcatggctc |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39538127 |
gcaagatacctttgcaagaatttcaggatactgtgagcaaactgatatccattctccttatgttactgtctatgaatctttgctctattcagcatggctc |
39538028 |
T |
|
| Q |
101 |
cgattgtccccagacatcaatgctgaaaccagaaaggttagtattttaatcacttgagattttac |
165 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
39538027 |
cggttgtctccagacatcaatgctgaaaccaggaaggttagtattttaatcacttcagattttac |
39537963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 39366089 - 39366229
Alignment:
| Q |
1 |
gcaagaaacctttgcaagaatttcaggatactgtgagcaaactgatatccattctcctcatgttactgtctatgaatctttgctctattcagcatggctc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
39366089 |
gcaagaaacctttgcaagaatttctggatactgcgagcaaactgatatccattctcctcatgttactgtctatgaatctttactctattcagcatggctc |
39366188 |
T |
|
| Q |
101 |
cgattgtccccagacatcaatgctgaaaccagaaaggttag |
141 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
39366189 |
cgattgtcccctgacatcaatgctgaaaccagaaaggttag |
39366229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 39564364 - 39564202
Alignment:
| Q |
1 |
gcaagaaacctttgcaagaatttcaggatactgtgagcaaactgatatccattctcctcatgttactgtctatgaatctttgctctattcagcatggctc |
100 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39564364 |
gcaagaaacctttgcaagaatttctgggtactgtgagcaaaatgatatccactctccttatgttactgtctatgaatctttgctctattcagcatggctc |
39564265 |
T |
|
| Q |
101 |
cgattgtccccagacatcaatgctgaaaccagaaaggttagtattttaatcacttgagatttt |
163 |
Q |
| |
|
|| |||||||||||||||||||||||||| |||||||||||| | | ||| |||||| ||||| |
|
|
| T |
39564264 |
cggttgtccccagacatcaatgctgaaactagaaaggttagtttctcaattacttgaaatttt |
39564202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 39589413 - 39589308
Alignment:
| Q |
1 |
gcaagaaacctttgcaagaatttcaggatactgtgagcaaactgatatccattctcctcatgttactgtctatgaatctttgctctattcagcatggctc |
100 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
39589413 |
gcaagaaacatttgcaagaatttctggatactgtgagcaaaatgatatccactctcctcatgttactgtatatgaatctttgctctattcagcatggctt |
39589314 |
T |
|
| Q |
101 |
cgattg |
106 |
Q |
| |
|
|||||| |
|
|
| T |
39589313 |
cgattg |
39589308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 5 - 144
Target Start/End: Complemental strand, 39622177 - 39622038
Alignment:
| Q |
5 |
gaaacctttgcaagaatttcaggatactgtgagcaaactgatatccattctcctcatgttactgtctatgaatctttgctctattcagcatggctccgat |
104 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| |||| | |||||||||||||| |||||||||| |||||||| ||||||| ||| ||||||||||||| |
|
|
| T |
39622177 |
gaaacctttgcaagagtttgtggatactgtgaacaaaattatatccattctccttatgttactgtatatgaatcattgctcttttcggcatggctccgat |
39622078 |
T |
|
| Q |
105 |
tgtccccagacatcaatgctgaaaccagaaaggttagtat |
144 |
Q |
| |
|
|||| |||| ||||||||||||||||| |||||| |||| |
|
|
| T |
39622077 |
tgtctgcagaaatcaatgctgaaaccaggaaggttggtat |
39622038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 39575175 - 39575074
Alignment:
| Q |
1 |
gcaagaaacctttgcaagaatttcaggatactgtgagcaaactgatatccattctcctcatgttactgtctatgaatctttgctctattcagcatggctc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |||||| || ||||||||| |||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
39575175 |
gcaagaaacctttgcaagaatttccggatactgtgagcaaaatgatatacactctcctcatattacggtctatgagtctttgctctattcagcatggctc |
39575076 |
T |
|
| Q |
101 |
cg |
102 |
Q |
| |
|
|| |
|
|
| T |
39575075 |
cg |
39575074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 99
Target Start/End: Complemental strand, 42133090 - 42133023
Alignment:
| Q |
32 |
tgtgagcaaactgatatccattctcctcatgttactgtctatgaatctttgctctattcagcatggct |
99 |
Q |
| |
|
|||||||||| |||||| |||||||| |||| ||||||||||||||||| || | ||| |||||||| |
|
|
| T |
42133090 |
tgtgagcaaaatgatattcattctccctatgtaactgtctatgaatctttactattttctgcatggct |
42133023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 78
Target Start/End: Complemental strand, 42171872 - 42171837
Alignment:
| Q |
43 |
tgatatccattctcctcatgttactgtctatgaatc |
78 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42171872 |
tgatattcattctcctcatgttactgtctatgaatc |
42171837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 102
Target Start/End: Original strand, 49773246 - 49773325
Alignment:
| Q |
23 |
tcaggatactgtgagcaaactgatatccattctcctcatgttactgtctatgaatctttgctctattcagcatggctccg |
102 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| | | ||||| ||||||||||| |
|
|
| T |
49773246 |
tcaggatactgtgagcaaactgatatccactctccccatgttactgtctatgaatctcttgtttattctgcatggctccg |
49773325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 44223262 - 44223164
Alignment:
| Q |
1 |
gcaagaaacctttgcaagaatttcaggatactgtgagcaaactgatatccattctcctcatgttactgtctatgaatctttgctctattcagcatggct |
99 |
Q |
| |
|
||||||||| ||||| |||||||| || ||||||||||| | |||||||||||| || |||||||| || ||||| |||||||| ||||| || ||||| |
|
|
| T |
44223262 |
gcaagaaacatttgctagaatttctggctactgtgagcagaatgatatccattcaccgcatgttacagtttatgagtctttgctttattcggcgtggct |
44223164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 44234084 - 44233986
Alignment:
| Q |
1 |
gcaagaaacctttgcaagaatttcaggatactgtgagcaaactgatatccattctcctcatgttactgtctatgaatctttgctctattcagcatggct |
99 |
Q |
| |
|
||||||||| ||||| ||||| || || ||||||||||| | |||||||||||| ||||||||||| || ||||| |||||||| || ||||| ||||| |
|
|
| T |
44234084 |
gcaagaaacatttgctagaatctccggttactgtgagcagaatgatatccattcacctcatgttacagtttatgagtctttgctttactcagcgtggct |
44233986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 43457654 - 43457586
Alignment:
| Q |
2 |
caagaaacctttgcaagaatttcaggatactgtgagcaaactgatatccattctcctcatgttactgtc |
70 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| || ||||| ||||||||||| || || ||||||||| |
|
|
| T |
43457654 |
caagaaacatttgcaagaatttctggatactgcgaacaaaccgatatccattcaccacaagttactgtc |
43457586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 44211100 - 44211002
Alignment:
| Q |
1 |
gcaagaaacctttgcaagaatttcaggatactgtgagcaaactgatatccattctcctcatgttactgtctatgaatctttgctctattcagcatggct |
99 |
Q |
| |
|
||||||||| ||||| ||||| || || |||||||| || | |||||| ||||| ||||||||||| || |||||||| | || || ||||||||||| |
|
|
| T |
44211100 |
gcaagaaacatttgctagaatatctggctactgtgaacagaatgatattcattcacctcatgttacagtttatgaatcccttctttactcagcatggct |
44211002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 2887037 - 2887110
Alignment:
| Q |
2 |
caagaaacctttgcaagaatttcaggatactgtgagcaaactgatatccattctcctcatgttactgtctatga |
75 |
Q |
| |
|
|||||||| ||||| |||| || || || |||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
2887037 |
caagaaacgtttgctcgaatctctggttattgtgagcagaatgatatccattctcctcatgttactgtctatga |
2887110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 2897339 - 2897266
Alignment:
| Q |
2 |
caagaaacctttgcaagaatttcaggatactgtgagcaaactgatatccattctcctcatgttactgtctatga |
75 |
Q |
| |
|
|||||||| ||||| |||| || || || |||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
2897339 |
caagaaacgtttgctcgaatctctggttattgtgagcagaatgatatccattctcctcatgttactgtctatga |
2897266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 2877269 - 2877367
Alignment:
| Q |
1 |
gcaagaaacctttgcaagaatttcaggatactgtgagcaaactgatatccattctcctcatgttactgtctatgaatctttgctctattcagcatggct |
99 |
Q |
| |
|
||||||||| ||||| ||||| || || || |||||||| | ||||||||| || ||||| |||||||||||||| || || || |||||||| ||||| |
|
|
| T |
2877269 |
gcaagaaacatttgctagaatctctggctattgtgagcagaatgatatccactcccctcaagttactgtctatgagtccttactgtattcagcttggct |
2877367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 4501303 - 4501368
Alignment:
| Q |
2 |
caagaaacctttgcaagaatttcaggatactgtgagcaaactgatatccattctcctcatgttact |
67 |
Q |
| |
|
|||||||||||||||||| |||| || || ||||| ||||||||||| ||||| ||||| |||||| |
|
|
| T |
4501303 |
caagaaacctttgcaagagtttctggttattgtgaacaaactgatattcattcacctcaagttact |
4501368 |
T |
|
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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 2160930 - 2160857
Alignment:
| Q |
26 |
ggatactgtgagcaaactgatatccattctcctcatgttactgtctatgaatctttgctctattcagcatggct |
99 |
Q |
| |
|
||||| || |||||| |||||||||||| ||| ||||||| || |||||||||||| | ||||| |||||||| |
|
|
| T |
2160930 |
ggatattgcgagcaatttgatatccattcacctaatgttacagtttatgaatctttgttatattcggcatggct |
2160857 |
T |
|
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