View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14300_low_44 (Length: 251)
Name: NF14300_low_44
Description: NF14300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14300_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 114; Significance: 6e-58; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 36112662 - 36112812
Alignment:
| Q |
1 |
tctaaccccacaattttgtaacatgtatacatgnnnnnnnnnnaatgtttttaggttcctgaaggactaagcagacatgttgtgtcttccaaaaaggctc |
100 |
Q |
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| T |
36112662 |
tctaaccccacaattttgtaacatgtatacatgcttttttt--aatgtttttaggttcctgaaggactaagcagacatgttgtgtcttccaaaaaggctc |
36112759 |
T |
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| Q |
101 |
aagccaactggtacacacaatttcaacacattgttcctttgttaaattgatta |
153 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
36112760 |
aagccaactggtacactcaatttcaacacattgttcctttgttaaattgatta |
36112812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 135 - 235
Target Start/End: Original strand, 36112824 - 36112925
Alignment:
| Q |
135 |
tcctttgttaaattgattagt-ttaaaaaattagaaattttcatgaaattaatttctatactctgttagtgtattttttactccttcatctaatcaaatt |
233 |
Q |
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||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
36112824 |
tcctttgttaaattgattactgttataaaattagaaattttcatgaaattaatttctatacactgtcagtgtattttttactccttcatctaatcaaatt |
36112923 |
T |
|
| Q |
234 |
ac |
235 |
Q |
| |
|
|| |
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| T |
36112924 |
ac |
36112925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 48 - 153
Target Start/End: Original strand, 36117727 - 36117832
Alignment:
| Q |
48 |
tttttaggttcctgaaggactaagcagacatgttgtgtcttccaaaaaggctcaagccaactggtacacacaatttcaacacattgttcctttgttaaat |
147 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||| || |||||||| ||||||||||||| |||||||||||||||| |
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| T |
36117727 |
ttttcaggttccagaaggactaagcagacatgttgtgtcttccaaaaaagctcaagctaagtggtacactcaatttcaacacactgttcctttgttaaat |
36117826 |
T |
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| Q |
148 |
tgatta |
153 |
Q |
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|||||| |
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| T |
36117827 |
tgatta |
36117832 |
T |
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