View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14300_low_56 (Length: 214)
Name: NF14300_low_56
Description: NF14300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14300_low_56 |
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Alignment Details
Target: chr3 (Bit Score: 146; Significance: 4e-77; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 19 - 172
Target Start/End: Original strand, 1912008 - 1912161
Alignment:
| Q |
19 |
atttcccagattcaatagcaggcaatcttctcaggagactcgacacttgccttaatagtgaattctcacaaggaacgtcacctgtttttaaacaaaaaga |
118 |
Q |
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| T |
1912008 |
atttcccagattcaatagcaggcaatcttctcaggagacttgacacttgccttaatagtgaattctcacaaggaacgtcacctgtttttaaacaaaaagt |
1912107 |
T |
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| Q |
119 |
ttaaatggtattacttcagggagatacaatataggtaggctatgtataatatat |
172 |
Q |
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| T |
1912108 |
ttaaatggtattacttcagggagatacaatataggtaggctatgtataatatat |
1912161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 19 - 176
Target Start/End: Complemental strand, 2933708 - 2933548
Alignment:
| Q |
19 |
atttcccagattcaatagcaggcaatcttctcaggagactcgacacttgccttaatagtgaattctcacaaggaacgtcacctgtttttaaacaa---aa |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | || |
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| T |
2933708 |
atttcccagattcaatagcaggcaatcttctcaggagactcgacacttgccttaatagtaaattctcacaaggaacgtcacctgtttttaaaagaattaa |
2933609 |
T |
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| Q |
116 |
agattaaatggtattacttcagggagatacaatataggtaggctatgtataatatatggtt |
176 |
Q |
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| T |
2933608 |
ggtttaaatggttttacttcagggagatacaatataggcaggctatgtataatatatggtt |
2933548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 19 - 176
Target Start/End: Original strand, 1895136 - 1895295
Alignment:
| Q |
19 |
atttcccagattcaatagcaggcaatcttctcaggagactcgacacttgccttaatagtgaattctcacaaggaacgtcacctgttttt-aaacaa-aaa |
116 |
Q |
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| T |
1895136 |
atttcccagattcaaaagcaggcaatcttctcaggagactcgacacttgccttaatagtgaattctcacaaggaacgtcacctatttttaaaacaataag |
1895235 |
T |
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| Q |
117 |
gattaaatggtattacttcagggagatacaatataggtaggctatgtataatatatggtt |
176 |
Q |
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| T |
1895236 |
gtttaaatggtttaacttcagggagatacaatataggttggctatgtataatatatggtt |
1895295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 19 - 176
Target Start/End: Original strand, 1904582 - 1904741
Alignment:
| Q |
19 |
atttcccagattcaatagcaggcaatcttctcaggagactcgacacttgccttaatagtgaattctcacaaggaacgtcacctgttttt-aaacaa-aaa |
116 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| || |
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| T |
1904582 |
atttcccagattcaaaagcaggcaatcttctcaggagactcgacacttgccttaatagtgaattctcacaaggaacgtcacctatttttaaaacaataag |
1904681 |
T |
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| Q |
117 |
gattaaatggtattacttcagggagatacaatataggtaggctatgtataatatatggtt |
176 |
Q |
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| T |
1904682 |
gtttaaatggtttaacttcagggagatacaatataggttggctatgtataatatatggtt |
1904741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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