View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14300_low_6 (Length: 678)
Name: NF14300_low_6
Description: NF14300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14300_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 545; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 17 - 669
Target Start/End: Complemental strand, 35294059 - 35293373
Alignment:
| Q |
17 |
tcattgtcatctccgattaaatcacccacgcgcacggatgcaaaggtaaagtcatgagccttagaagcttcagcagataccatggcaatgagcatggcta |
116 |
Q |
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| T |
35294059 |
tcattgtcatctccgattaaatcacccacgcgcacggatgcaaaggtaaagtcatgaaccttagaagcttcagcagataccatggcaatgagcatggcta |
35293960 |
T |
|
| Q |
117 |
gaaagaagaacataatccatgacttgaagtttaacattttagataatatgggtaaggtaatgaaacttttttgtttgtttgaaatgtagagagaatagag |
216 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35293959 |
gaaagaagaacataatccatgacttgatgtttaacattttagataatatgggtaaggtaatgaaacttttttgtttgtttgaaatgtagagagaatagag |
35293860 |
T |
|
| Q |
217 |
aat--------------tgcctttgcctctacccttcttgatagaagtgggaaataggaggataaaatagtatgcaagttagaaattaggttgttgtgtt |
302 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35293859 |
aatagagaatagagaattgcctttgcctctacccttcttgatagaagtgggaaataggaggataaaatagtatgcaagttagaaattaggttgttgtgtt |
35293760 |
T |
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| Q |
303 |
atttgtgacttaacgtgattatgggtgaatgttgatacatttccccatttatttctcctacgttttctcttctaagtttggtgaatggatccgttgttgt |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35293759 |
atttgtgacttaacgtgattatgggtgaatgttgatacatttccccatttatttctcctacgttttctcttctaagtttggtgaatggatccgttgttgt |
35293660 |
T |
|
| Q |
403 |
tgctaaatatagatatgtcctggtccttttccaggtcactagttcaaatgcatgatgcatgtattatctataagttgaagcccacatgtttctctaactg |
502 |
Q |
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| T |
35293659 |
tgctaaatatagatatgtcctggaccttttctaggtcactagttcaaatgcatgatgcatgtattatctataagttgaagcccacatgtttctctaactg |
35293560 |
T |
|
| Q |
503 |
ataggaaaaggtaataccaccaatacatag---------------------ctaattttgtatggggactccaaaagtccttcatatccattcattatgt |
581 |
Q |
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|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35293559 |
ataggaaaaggtaataccaccaatacatagctaaatttacaatgtaggatactaaatttgtatggggactccaaaagtccttcatatccattcattatgt |
35293460 |
T |
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| Q |
582 |
tctaccaaaggaagtttattcgatcaaaagtcctttatatccattcatcatgttcaattgatgtccaagaatagctatggagtattat |
669 |
Q |
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| T |
35293459 |
tctaccaaaggaagtttattcgatcaaaagtcctttatatccattcatcatgttcaattgatgtcc-agaatagctatggagtattat |
35293373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 99; Significance: 2e-48; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 58 - 208
Target Start/End: Original strand, 20717047 - 20717197
Alignment:
| Q |
58 |
aaaggtaaagtcatgagccttagaagcttcagcagataccatggcaatgagcatggctagaaagaagaacataatccatgacttgaagtttaacatttta |
157 |
Q |
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|||| ||||||||||| | |||||||||| ||||||||||||||| |||| ||||||||| ||||||||||||| ||||| ||||||||||| ||||||| |
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| T |
20717047 |
aaagctaaagtcatgaactttagaagctttagcagataccatggcgatgaccatggctaggaagaagaacataagccatggcttgaagtttatcatttta |
20717146 |
T |
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| Q |
158 |
gataatatgggtaaggtaatgaaacttttttgtttgtttgaaatgtagaga |
208 |
Q |
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| T |
20717147 |
gataatatgggtaaggtattgagactttgttgtttgtttgaaatgtagaga |
20717197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 391 - 501
Target Start/End: Original strand, 20717783 - 20717893
Alignment:
| Q |
391 |
atccgttgttgttgctaaatatagatatgtcctggtccttttccaggtcactagttcaaatgcatgatgcatgtattatctataagttgaagcccacatg |
490 |
Q |
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|||||| |||||||||||||||||| | ||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||| ||||||| |
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| T |
20717783 |
atccgtagttgttgctaaatatagacaggtcctggtccttttctaggtcactagttcaaatgcaagatgcatgtcctatctataagttgaatcccacata |
20717882 |
T |
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| Q |
491 |
tttctctaact |
501 |
Q |
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||||||||||| |
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| T |
20717883 |
tttctctaact |
20717893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 533 - 595
Target Start/End: Original strand, 20717946 - 20718008
Alignment:
| Q |
533 |
ctaattttgtatggggactccaaaagtccttcatatccattcattatgttctaccaaaggaag |
595 |
Q |
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|||| |||| || |||||||||||||||||||||||||| |||| |||||| | ||||||||| |
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| T |
20717946 |
ctaaatttgcattgggactccaaaagtccttcatatccactcatcatgttcgatcaaaggaag |
20718008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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