View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14300_low_7 (Length: 638)

Name: NF14300_low_7
Description: NF14300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14300_low_7
NF14300_low_7
[»] chr8 (3 HSPs)
chr8 (1-590)||(38652871-38653488)
chr8 (9-59)||(38626734-38626784)
chr8 (588-624)||(38653599-38653635)
[»] chr3 (1 HSPs)
chr3 (210-401)||(43490025-43490216)
[»] chr6 (2 HSPs)
chr6 (210-391)||(13409874-13410055)
chr6 (236-387)||(10554595-10554746)
[»] chr1 (1 HSPs)
chr1 (211-397)||(44331736-44331922)
[»] chr7 (2 HSPs)
chr7 (280-387)||(6568891-6568998)
chr7 (280-387)||(6583050-6583157)
[»] chr2 (2 HSPs)
chr2 (263-315)||(44648686-44648738)
chr2 (268-316)||(15403640-15403688)
[»] chr4 (3 HSPs)
chr4 (263-324)||(1726249-1726310)
chr4 (344-390)||(33735633-33735679)
chr4 (263-315)||(2428679-2428731)


Alignment Details
Target: chr8 (Bit Score: 437; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 590
Target Start/End: Original strand, 38652871 - 38653488
Alignment:
Q  1 tgtataacttgaagaataagaagctgacggtgacattgaagtttgaagagaagccactggaaagt---------------agtcatagtacttgtttgaa 85  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||               ||||||| ||||||||||||    
T  38652871 tgtataacttgaagaataagaagctgacggtgacactgaagtttgaagagaagccattggaaagttttgaccattgaagtagtcataatacttgtttgaa 38652970  T
Q  86 ctttgcaaagtatgaagaatttcattgtgaaccatagga------tcagttctaggttgatgtgacaaaagggcactattagaatatgaaatgttcaaat 179  Q
    |||||||||||||||||| ||||||||||||| ||||||      |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  38652971 ctttgcaaagtatgaagagtttcattgtgaactataggatcaggatcagttctaggttgatgtgacaaaagggcactattagaatgtgaaatgttcaaat 38653070  T
Q  180 gggtcggtgttgattgttgttgcttgagcttaacattttcagggaagttgagttttgctttgtttcctctaaaacgcaatgaagcttgatcataggcttt 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38653071 gggtcggtgttgattgttgttgcttgagcttaacattttcagggaagttgagttttgctttgtttcctctaaaacgcaatgaagcttgatcataggcttt 38653170  T
Q  280 agctgcatcttcagctgtttcaaatgtacctaaccatactcttgtagctttgaaaggatctcttatctctgctgcccattttccccatggcctctgtctt 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38653171 agctgcatcttcagctgtttcaaatgtacctaaccatactcttgtagctttgaaaggatctcttatctctgctgcccattttccccatggcctctgtctt 38653270  T
Q  380 actcctctgtattttctttttggttcgtcttcatttttcacattgttattgtctgttctgtattcatatatttgttcttcaacttggctccttc------ 473  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  38653271 actcctctgtattttctttttggttggtcttcatttttcacattgttattgtctgttctgtattcatatatttgttcttcaacttggctccttcctgttg 38653370  T
Q  474 ---------ctgtgtttgtccagttgcttgaacattctacacctacattacatagaatcaatcaaatccattaattaatatattttctgcaccaagacag 564  Q
             ||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||    |||||||||||||||||||||||||||    
T  38653371 ttgttgttactgtgtttgtccagttgcttgaacattctacacctacattacatag----aatcaaatcc----attaatatattttctgcaccaagacag 38653462  T
Q  565 aaccaaaaatagtttcgttgctttta 590  Q
    ||||||||||||||| ||||||||||    
T  38653463 aaccaaaaatagtttggttgctttta 38653488  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 38626734 - 38626784
Alignment:
Q  9 ttgaagaataagaagctgacggtgacattgaagtttgaagagaagccactg 59  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  38626734 ttgaagaataagaagctgacagtgacactgaagtttgaagagaagccactg 38626784  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 588 - 624
Target Start/End: Original strand, 38653599 - 38653635
Alignment:
Q  588 ttaatgtcttgagttggatgtgatcacaatatgcgac 624  Q
    |||||||||||||||||||||||||||||||||||||    
T  38653599 ttaatgtcttgagttggatgtgatcacaatatgcgac 38653635  T

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Target: chr3 (Bit Score: 116; Significance: 1e-58; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 210 - 401
Target Start/End: Original strand, 43490025 - 43490216
Alignment:
Q  210 taacattttcagggaagttgagttttgctttgtttcctctaaaacgcaatgaagcttgatcataggctttagctgcatcttcagctgtttcaaatgtacc 309  Q
    |||||||||||||||| |||||||| |||||||| ||||||||||| |  | ||||| |||||| ||| |||| ||  ||||||||||||||||||| ||    
T  43490025 taacattttcagggaaattgagtttggctttgttgcctctaaaacgaagagcagcttcatcatatgctctagcagctgcttcagctgtttcaaatgttcc 43490124  T
Q  310 taaccatactcttgtagctttgaaaggatctcttatctctgctgcccattttccccatggcctctgtcttactcctctgtattttctttttg 401  Q
    ||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  43490125 taaccatactcttgctgctttgaatggatctcttatctctgctgcccattttccccatggtctctgtcttactcctctgtattttctctttg 43490216  T

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Target: chr6 (Bit Score: 78; Significance: 5e-36; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 210 - 391
Target Start/End: Complemental strand, 13410055 - 13409874
Alignment:
Q  210 taacattttcagggaagttgagttttgctttgtttcctctaaaacgcaatgaagcttgatcataggctttagctgcatcttcagctgtttcaaatgtacc 309  Q
    ||||||||||||||||||||||||||||| || ||||||| || | ||||| ||||| |||||| ||  |||||||| |||| ||||| || ||||| ||    
T  13410055 taacattttcagggaagttgagttttgctctgcttcctctgaatctcaatgcagcttcatcataagccctagctgcagcttctgctgtgtcgaatgttcc 13409956  T
Q  310 taaccatactcttgtagctttgaaaggatctcttatctctgctgcccattttccccatggcctctgtcttactcctctgtat 391  Q
    || ||||||||||   ||||||   ||||||||||| ||||||||||||||||||||||| || ||||| ||||||||||||    
T  13409955 tagccatactctttgtgctttgtgtggatctcttatttctgctgcccattttccccatggtctttgtctcactcctctgtat 13409874  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 236 - 387
Target Start/End: Complemental strand, 10554746 - 10554595
Alignment:
Q  236 gctttgtttcctctaaaacgcaatgaagcttgatcataggctttagctgcatcttcagctgtttcaaatgtacctaaccatactcttgtagctttgaaag 335  Q
    |||||||||||| | || | ||||| ||||| |||||| ||  |||||||| |||||||||||||||| || || | ||| |||||||   ||||   ||    
T  10554746 gctttgtttcctttgaatctcaatgcagcttcatcataagcagtagctgcagcttcagctgtttcaaaggtgccaagccacactcttgctccttttttag 10554647  T
Q  336 gatctcttatctctgctgcccattttccccatggcctctgtcttactcctct 387  Q
    |||||||||| || ||||||||||| ||||| || || || ||||| |||||    
T  10554646 gatctcttatttcagctgcccatttcccccaaggtctttgccttacacctct 10554595  T

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Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 211 - 397
Target Start/End: Original strand, 44331736 - 44331922
Alignment:
Q  211 aacattttcagggaagttgagttttgctttgtttcctctaaaacgcaatgaagcttgatcataggctttagctgcatcttcagctgtttcaaatgtacct 310  Q
    |||||||||||||||||||||||| ||| |||||||||| || |  |||| ||||| ||| || ||| | |||||| |||| || ||||||||||| ||     
T  44331736 aacattttcagggaagttgagtttcgctctgtttcctctgaatcttaatgcagcttcatcgtaagctcttgctgcagcttctgcagtttcaaatgttcca 44331835  T
Q  311 aaccatactcttgtagctttgaaaggatctcttatctctgctgcccattttccccatggcctctgtcttactcctctgtattttctt 397  Q
    | |||||||||||  ||||||   |||||||  || ||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  44331836 agccatactcttgctgctttgtgtggatctcgaatttctgctgcccattttccccatggtctctgtcttactcctctgtatcttctt 44331922  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 387
Target Start/End: Complemental strand, 6568998 - 6568891
Alignment:
Q  280 agctgcatcttcagctgtttcaaatgtacctaaccatactcttgtagctttgaaaggatctcttatctctgctgcccattttccccatggcctctgtctt 379  Q
    |||||||||||||||||| |||||||| |||||||| ||||| |  |||||    || || | ||| || |||||||||||||||||||| ||||||||     
T  6568998 agctgcatcttcagctgtatcaaatgttcctaaccaaactctagctgctttttttgggtcacgtatttcagctgcccattttccccatggtctctgtctc 6568899  T
Q  380 actcctct 387  Q
    ||||||||    
T  6568898 actcctct 6568891  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 280 - 387
Target Start/End: Complemental strand, 6583157 - 6583050
Alignment:
Q  280 agctgcatcttcagctgtttcaaatgtacctaaccatactcttgtagctttgaaaggatctcttatctctgctgcccattttccccatggcctctgtctt 379  Q
    |||||||||||||||||| |||||||| |||||||| ||||| |  |||||    || || | ||| || |||||||||||||||||||| || |||||     
T  6583157 agctgcatcttcagctgtgtcaaatgttcctaaccaaactctagctgctttttttgggtcacgtatttcagctgcccattttccccatggtctttgtctc 6583058  T
Q  380 actcctct 387  Q
    ||||||||    
T  6583057 actcctct 6583050  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 263 - 315
Target Start/End: Original strand, 44648686 - 44648738
Alignment:
Q  263 gcttgatcataggctttagctgcatcttcagctgtttcaaatgtacctaacca 315  Q
    |||| |||||| ||||||||||| |||||||||||||||||||| ||||||||    
T  44648686 gcttcatcatatgctttagctgcttcttcagctgtttcaaatgttcctaacca 44648738  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 268 - 316
Target Start/End: Complemental strand, 15403688 - 15403640
Alignment:
Q  268 atcataggctttagctgcatcttcagctgtttcaaatgtacctaaccat 316  Q
    |||||| ||| ||||||| ||||||||||| ||||||||||||||||||    
T  15403688 atcataagctctagctgcttcttcagctgtgtcaaatgtacctaaccat 15403640  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 263 - 324
Target Start/End: Complemental strand, 1726310 - 1726249
Alignment:
Q  263 gcttgatcataggctttagctgcatcttcagctgtttcaaatgtacctaaccatactcttgt 324  Q
    |||| |||||| ||| | ||||||||||| |||||||||||||| |||||||||| ||||||    
T  1726310 gcttcatcatatgctcttgctgcatcttctgctgtttcaaatgttcctaaccatattcttgt 1726249  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 344 - 390
Target Start/End: Complemental strand, 33735679 - 33735633
Alignment:
Q  344 atctctgctgcccattttccccatggcctctgtcttactcctctgta 390  Q
    ||||| || ||||||||||||||||||||||| || |||||||||||    
T  33735679 atctcagcagcccattttccccatggcctctgcctcactcctctgta 33735633  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 263 - 315
Target Start/End: Original strand, 2428679 - 2428731
Alignment:
Q  263 gcttgatcataggctttagctgcatcttcagctgtttcaaatgtacctaacca 315  Q
    |||| |||||| ||| ||||||| ||||||||||| |||||||| ||||||||    
T  2428679 gcttcatcatatgctctagctgcttcttcagctgtctcaaatgttcctaacca 2428731  T

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