View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14300_low_9 (Length: 604)
Name: NF14300_low_9
Description: NF14300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14300_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 9 - 359
Target Start/End: Complemental strand, 7132293 - 7131944
Alignment:
| Q |
9 |
tttaaatacgcaaattctaacaaataccttaagaacacatgttaatgaatcaaaaatagaaagtttatcttagaatttgggtttaaaagaacattttata |
108 |
Q |
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| T |
7132293 |
tttaaatacgacaatgctaacaaataccctaagaacacatgttaatgaatcaaaaatagaaactttatcttagaatttgggtttaaaagtacattttata |
7132194 |
T |
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| Q |
109 |
aactccaaagtattaaatacacaatttttaagataaatttatatatttgattccttaacatgtatccttgagagttgaaacacttgttagcaagactcat |
208 |
Q |
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| T |
7132193 |
aactccaaagtattaaatacacaattttcaagataaatttatatattcgattccttaacatgtatccttgagagttgagacacttgttag-aagactcat |
7132095 |
T |
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| Q |
209 |
caaacttgatatgggtaacagattcaaacaataagccaaacaaatattcaaatttcatctttggagacaaaccaaagatgaaatagtatttaggatttga |
308 |
Q |
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| T |
7132094 |
caaacttgatatgggtaacagattcaaacaataagccaaacaaatattcaaatttcatctttggagacaaaccaaagatgaaatggtatttaggatttga |
7131995 |
T |
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| Q |
309 |
ttgtttattgttatcatccctagcctagaaaagagggttgatacttgatag |
359 |
Q |
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| T |
7131994 |
ttgtttattgttatcatccctagactagaaaagagggttgatacttgatag |
7131944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 470 - 588
Target Start/End: Complemental strand, 7131952 - 7131837
Alignment:
| Q |
470 |
acttgatagcctcatcattgtcttcaatatcccaactgagatcctcatcttaatcagccgtagctactgcactcaaccttttccgcaagtcaatcttact |
569 |
Q |
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| T |
7131952 |
acttgatagcctcatcattgtcttcaatatcccaactgagatcctcatcttaatcagccgtag---ctgcactcaaccttttccgcaagtcaatcttact |
7131856 |
T |
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| Q |
570 |
ttcagacccaccagcatcc |
588 |
Q |
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| T |
7131855 |
ttcagacccaccagcatcc |
7131837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 459 - 588
Target Start/End: Complemental strand, 7123570 - 7123444
Alignment:
| Q |
459 |
atctggtcatgacttgatagcctcatcattgtcttcaatatcccaactgagatcctcatcttaatcagccgtagctactgcactcaaccttttccgcaag |
558 |
Q |
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| T |
7123570 |
atctggtcatgacttgacagcttcatcatcttcttcaatatcccaactaagatcctcatcttcatcagc---agttgccgcactcaatctcttctgcaaa |
7123474 |
T |
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| Q |
559 |
tcaatcttactttcagacccaccagcatcc |
588 |
Q |
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| T |
7123473 |
tcaatcttactttcagacgcaccagcatcc |
7123444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 44 - 171
Target Start/End: Original strand, 44744527 - 44744654
Alignment:
| Q |
44 |
cacatgttaatgaatcaaaaatagaaagtttatcttagaatttgggtttaaaagaacattttataaactccaaagtattaaatacacaatttttaagat- |
142 |
Q |
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| T |
44744527 |
cacatgttaagaaaccaaagatagaaactttatcttggaatttgtgtttaaaagaacaattt-taaacttcaaagaattaaatacacaatttccaagata |
44744625 |
T |
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| Q |
143 |
aaatttatatatttgattccttaacatgt |
171 |
Q |
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| T |
44744626 |
aaatttctatctttgcgtccttaacatgt |
44744654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 44 - 171
Target Start/End: Original strand, 38430038 - 38430166
Alignment:
| Q |
44 |
cacatgttaatgaatcaaaaatagaaagtttatcttagaatttgggtttaaaagaacattttataaactccaaagtattaaatacacaatttttaagata |
143 |
Q |
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||||||||| ||| |||| ||||||| ||||||| |||||| ||| ||||||| | ||| |||||| ||||| ||||||||||||||||| |||| | |
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| T |
38430038 |
cacatgttatggaaccaaagatagaaatattatcttcgaatttatgttcaaaagaataatttttaaacttcaaagaattaaatacacaattttcaagaga |
38430137 |
T |
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| Q |
144 |
a-atttatatatttgattccttaacatgt |
171 |
Q |
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| T |
38430138 |
atatttcaatatttggttccttaatatgt |
38430166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 34390581 - 34390642
Alignment:
| Q |
50 |
ttaatgaatcaaaaatagaaagtttatcttagaatttgggtttaaaagaacattttataaac |
111 |
Q |
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|||| |||||||| ||| ||| |||||||||||||||| ||||||||||||| ||| ||||| |
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| T |
34390581 |
ttaaggaatcaaagataaaaaatttatcttagaatttgtgtttaaaagaacaatttttaaac |
34390642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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