View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14301_high_1 (Length: 404)
Name: NF14301_high_1
Description: NF14301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14301_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 18 - 395
Target Start/End: Complemental strand, 38086013 - 38085636
Alignment:
| Q |
18 |
gcttgaatatgggaaatttctagaggtgtgacaattaaaagtggttttggtgttttgttggttgcaaatctgagattttgagttgaaaattggagtattg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38086013 |
gcttgaatatgggaaatttctagaggtgtgacaattacaagtggttttggtgttttgttggttgcaaatctgagattttgagttgaaaattggagtattg |
38085914 |
T |
|
| Q |
118 |
atgtgtatgatgaattggctttggtgtacacaactttagagattgaagtggagttatgtgaatagctatagagacattgaaggaagctattatcttcatn |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38085913 |
atgtgtatgatgaattggctttggtgtacacaactttagagattgaagtggagttatgtgaatagctatagagacattgaaggaagctattatcttcatt |
38085814 |
T |
|
| Q |
218 |
nnnnnnnnnnnnnnnnccaattgctgaagatttaaatgaaaataaaatagcaattagtacaatagacaagtatgagcctagatgcatcannnnnnngtta |
317 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38085813 |
agtagtagtagtagtaccaattgctgaagatgtaaatgaaaataaaatagcaattagtacaatagacaagtatgagcctagatgcatcatttttttgtta |
38085714 |
T |
|
| Q |
318 |
gtgtagtgttgtgcataagatgcttcaaatttataagtgtcactctatgctctaatttttattggtatatagaataat |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38085713 |
gtgtagtgttgtgcataagatgcttcaaatttataagtgtcactctatgctctaatttttattggtatatagaataat |
38085636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 38072501 - 38072319
Alignment:
| Q |
20 |
ttgaatatgggaaatttctagaggtgtgacaattaaaagtggttttggtgttttgttggttgcaaatctgagattttgagttgaaaattggagtattgat |
119 |
Q |
| |
|
||||||||||||||||| | |||||||| ||| | ||| ||||||||||||| ||||||||||||||||| |||||| ||||||||| |||||||||| |
|
|
| T |
38072501 |
ttgaatatgggaaatttgtgtaggtgtgataatgacaaggggttttggtgtttcattggttgcaaatctgaggttttgaattgaaaatttgagtattgat |
38072402 |
T |
|
| Q |
120 |
gtgtatgatgaattggctttggtgtacacaactttagagattgaagtggagttatgtgaatagctatagagacattgaaggaa |
202 |
Q |
| |
|
| ||| || ||||||| ||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
38072401 |
gagtaagaggaattggtttttgtgtacacaactttagagattgaagttatgttatgtgaataactatagagacattgaaggaa |
38072319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 20 - 203
Target Start/End: Complemental strand, 38081586 - 38081403
Alignment:
| Q |
20 |
ttgaatatgggaaatttctagaggtgtgacaattaaaagtggttttggtgttttgttggttgcaaatctgagattttgagttgaaaattggagtattgat |
119 |
Q |
| |
|
||||||||||||| |||||||||||||| || | |||||||||||||||||||| || ||||||||| ||||||||||||| ||||| ||||| || | |
|
|
| T |
38081586 |
ttgaatatgggaaggttctagaggtgtgatgatgacaagtggttttggtgttttgtaggatgcaaatcttagattttgagttgtaaatttgagtactggt |
38081487 |
T |
|
| Q |
120 |
gtgtatgatgaattggctttggtgtacacaactttagagattgaagtggagttatgtgaatagctatagagacattgaaggaag |
203 |
Q |
| |
|
| ||| || | ||||| |||||||||||||||||||||||||||||| |||||||||||||| ||| | ||||||||||||||| |
|
|
| T |
38081486 |
gagtaagagggattggttttggtgtacacaactttagagattgaagttgagttatgtgaataactagaaagacattgaaggaag |
38081403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 38058173 - 38057991
Alignment:
| Q |
20 |
ttgaatatgggaaatttctagaggtgtgacaattaaaagtggttttggtgttttgttggttgcaaatctgagattttgagttgaaaattggagtattgat |
119 |
Q |
| |
|
|||||| |||||||| | | |||||||| ||| ||||| ||||| |||||| |||||| ||||||||||||||||||||||| ||||| |||||| ||| |
|
|
| T |
38058173 |
ttgaatttgggaaatctgtttaggtgtgataatgaaaagaggtttaggtgttgtgttggatgcaaatctgagattttgagttgtaaatttgagtatcgat |
38058074 |
T |
|
| Q |
120 |
gtgtatgatgaattggctttggtgtacacaactttagagattgaagtggagttatgtgaatagctatagagacattgaaggaa |
202 |
Q |
| |
|
| ||| || ||||||| ||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||| |||||| |
|
|
| T |
38058073 |
gagtaagaggaattggttttggtgtacacaacttcagagattgaagttgagttatgtgaataactatagagacattcaaggaa |
38057991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 38062281 - 38062463
Alignment:
| Q |
20 |
ttgaatatgggaaatttctagaggtgtgacaattaaaagtggttttggtgttttgttggttgcaaatctgagattttgagttgaaaattggagtattgat |
119 |
Q |
| |
|
|||||| |||||||| | | |||||||| ||| | ||| ||||| |||||| | |||| ||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
38062281 |
ttgaatttgggaaatatgtttaggtgtgataatgacaagaggtttcggtgttgttttggatgcaaatctgagattttgagtggtaaattggagtattgat |
38062380 |
T |
|
| Q |
120 |
gtgtatgatgaattggctttggtgtacacaactttagagattgaagtggagttatgtgaatagctatagagacattgaaggaa |
202 |
Q |
| |
|
| ||| || ||||||| |||||||||||||| |||||| |||||||| |||||||||||||| |||||||||||||| ||||| |
|
|
| T |
38062381 |
gagtaagaggaattggttttggtgtacacaagtttagacattgaagttgagttatgtgaataactatagagacattgtaggaa |
38062463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 235 - 306
Target Start/End: Complemental strand, 38081380 - 38081309
Alignment:
| Q |
235 |
caattgctgaagatttaaatgaaaataaaatagcaattagtacaatagacaagtatgagcctagatgcatca |
306 |
Q |
| |
|
||||||| |||||| | ||||||||||||||||||| ||| ||| |||||| ||||||| |||| |||||| |
|
|
| T |
38081380 |
caattgcagaagatgcatatgaaaataaaatagcaataagtgcaacagacaaatatgagcttagaggcatca |
38081309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University