View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14301_high_3 (Length: 271)
Name: NF14301_high_3
Description: NF14301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14301_high_3 |
 | |
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| [»] scaffold0697 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 20 - 261
Target Start/End: Original strand, 32714466 - 32714707
Alignment:
| Q |
20 |
ataagcataccagccattaccacttcggcatcagacagtcgttcaatttcttttaaaatagagacaatctggttactcctatcagctgtgtgtttctcgt |
119 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
32714466 |
ataagcataccagccattaccacttctgcatcagacagtccttcaatttcttttaaaatagagacaatctggttcctcctatcagctgtgtgtttctcgt |
32714565 |
T |
|
| Q |
120 |
gcacaaaacaagaagtgaagacttgtttcatattctcaacaacattagcataaatctcacccaatttgttcaatgaatttgacatgctatcagaagcatc |
219 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32714566 |
gcacaaaacaagaagtgaagacgtgtttcatattctcaacaccattagcataaatctcacccaatttgttcaatgaatttgacatgctatcagaagcatc |
32714665 |
T |
|
| Q |
220 |
atcgttatacttcacccttttccccccacgctctctgctcct |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
32714666 |
atcgttatacttcacccttttccccccacgctttctggtcct |
32714707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 10641141 - 10640900
Alignment:
| Q |
20 |
ataagcataccagccattaccacttcggcatcagacagtcgttcaatttcttttaaaatagagacaatctggttactcctatcagctgtgtgtttctcgt |
119 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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|
| T |
10641141 |
ataagcataccagccattaccacttctgcatcagacaatccttcaatttcttttaaaatagagacaatttggttcctcctatcagctgtgtgtttctcgt |
10641042 |
T |
|
| Q |
120 |
gcacaaaacaagaagtgaagacttgtttcatattctcaacaacattagcataaatctcacccaatttgttcaatgaatttgacatgctatcagaagcatc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
10641041 |
gcacaaaacaagaagtgaagacttgtttcatattctcaacaccattagcataaatctcacccaatttgttcaatgaatttgacatgctatcataagcatc |
10640942 |
T |
|
| Q |
220 |
atcgttatacttcacccttttccccccacgctctctgctcct |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
10640941 |
atcgttatacttcacccttttccccccacgctttctggtcct |
10640900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 22905209 - 22904968
Alignment:
| Q |
20 |
ataagcataccagccattaccacttcggcatcagacagtcgttcaatttcttttaaaatagagacaatctggttactcctatcagctgtgtgtttctcgt |
119 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22905209 |
ataagcataccagccattagcacttctgcatcagaaagtccttcaatttcttttaaaatagagacaatctggttactcctatcagctgtgtgtttctcgt |
22905110 |
T |
|
| Q |
120 |
gcacaaaacaagaagtgaagacttgtttcatattctcaacaacattagcataaatctcacccaatttgttcaatgaatttgacatgctatcagaagcatc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22905109 |
gcacaaaacaagaagtgaagacttgtttcatattctcaacaccattagcataaatctcacccaatttgttcaatgaatttgacatgctatcagaagcatc |
22905010 |
T |
|
| Q |
220 |
atcgttatacttcacccttttccccccacgctctctgctcct |
261 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||| |||| |
|
|
| T |
22905009 |
atcgttatacttcaccctttttcccccacgctttctggtcct |
22904968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 20 - 240
Target Start/End: Original strand, 21532857 - 21533077
Alignment:
| Q |
20 |
ataagcataccagccattaccacttcggcatcagacagtcgttcaatttcttttaaaatagagacaatctggttactcctatcagctgtgtgtttctcgt |
119 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
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|
| T |
21532857 |
ataagcataccagccattaccacttctgcatcagacagtccttcaatttcttttaaaatagagacaatctggttcctcctatcagctgtgtgtttctcat |
21532956 |
T |
|
| Q |
120 |
gcacaaaacaagaagtgaagacttgtttcatattctcaacaacattagcataaatctcacccaatttgttcaatgaatttgacatgctatcagaagcatc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21532957 |
gcacaaaacaagaagtgaagacttgtttcatattctcaataccattagcataaatctcacccaatttgttcaatgaatttgacatgctatcagaagcatc |
21533056 |
T |
|
| Q |
220 |
atcgttatacttcaccctttt |
240 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
21533057 |
atcgttatacttcaccctttt |
21533077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 26664943 - 26664712
Alignment:
| Q |
20 |
ataagcataccagccattaccacttcggcatcagacagtcgttcaatttcttttaaaatagagacaatctggttactcctatcagctgtgtgtttctcgt |
119 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26664943 |
ataagcataccagccattaccacttctgcatcagacagtccttcaatttcttttaaaatagagacaatctggttcctcctatcagctgtgtgtttctcgt |
26664844 |
T |
|
| Q |
120 |
gcacaaaacaagaagtgaagacttgtttcatattctcaacaacattagcataaatctcacccaatttgttcaatgaatttgacatgctatcagaagcatc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26664843 |
gcacaaaacaagaagtgaagacttgtttcatattctcaacaccataagcataaatctcacccaatttgttcaatgaatttgacatgctatcagaagcatc |
26664744 |
T |
|
| Q |
220 |
atcgttatacttcacccttttccccccacgct |
251 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |
|
|
| T |
26664743 |
atcgttatacttcaccctttttcccccacgct |
26664712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0697 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: scaffold0697
Description:
Target: scaffold0697; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 3815 - 4046
Alignment:
| Q |
20 |
ataagcataccagccattaccacttcggcatcagacagtcgttcaatttcttttaaaatagagacaatctggttactcctatcagctgtgtgtttctcgt |
119 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
3815 |
ataagcataccagccattaccacttctgcatcagacagtccttcaatttcttttaaaatagagacaatctggttcctcctatcagctgtgtgtttctcat |
3914 |
T |
|
| Q |
120 |
gcacaaaacaagaagtgaagacttgtttcatattctcaacaacattagcataaatctcacccaatttgttcaatgaatttgacatgctatcagaagcatc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3915 |
gcacaaaacaagaagtgaagacttgtttcatattctcaataccattagcataaatctcacccaatttgttcaatgaatttgacatgctatcagaagcatc |
4014 |
T |
|
| Q |
220 |
atcgttatacttcacccttttccccccacgct |
251 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |
|
|
| T |
4015 |
atcgttatacttcaccctttttcccccacgct |
4046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 5668605 - 5668836
Alignment:
| Q |
20 |
ataagcataccagccattaccacttcggcatcagacagtcgttcaatttcttttaaaatagagacaatctggttactcctatcagctgtgtgtttctcgt |
119 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||| |
|
|
| T |
5668605 |
ataagcataccagccattaccacttctgcatcagacaatccttcaatttcttttaaaatagagacaatttggttcctcctatcagctgtgtgtttttcgt |
5668704 |
T |
|
| Q |
120 |
gcacaaaacaagaagtgaagacttgtttcatattctcaacaacattagcataaatctcacccaatttgttcaatgaatttgacatgctatcagaagcatc |
219 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5668705 |
gcacaaaacaagaagtaaagacttgtttcatattctcaacaccattagcataaatctcacccaatttgttcaatgaatttgacatgctatcagaagcatc |
5668804 |
T |
|
| Q |
220 |
atcgttatacttcacccttttccccccacgct |
251 |
Q |
| |
|
||| ||||||||||||||||| |||||||||| |
|
|
| T |
5668805 |
atcattatacttcaccctttttcccccacgct |
5668836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 68 - 240
Target Start/End: Original strand, 33322021 - 33322190
Alignment:
| Q |
68 |
tcttttaaaatagagacaatctggttactcctatcagctgtgtgtttctcgtgcacaaaacaagaagtgaagacttgtttcatattctcaacaacattag |
167 |
Q |
| |
|
|||||| ||||||||||||||||||| | | ||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||| |
|
|
| T |
33322021 |
tctttttaaatagagacaatctggttccgcatattagctatgtgtttctcgtgcacaaaacaataagtgaagacttgtttcatattctcaacaccgttag |
33322120 |
T |
|
| Q |
168 |
cataaatctcacccaatttgttcaatgaatttgacatgctatcagaagcatcatcgttatacttcaccctttt |
240 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||| ||||| |||| ||||||| ||||||||||||||||| |
|
|
| T |
33322121 |
cataaatctcacccgacttgttcaatgaatttgatatgct---agaaccatcatcattatacttcaccctttt |
33322190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 248
Target Start/End: Original strand, 13339070 - 13339298
Alignment:
| Q |
20 |
ataagcataccagccattaccacttcggcatcagacagtcgttcaatttcttttaaaatagagacaatctggttactcctatcagctgtgtgtttctcgt |
119 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||| |
|
|
| T |
13339070 |
ataaacataccagccattaccacttctgcatcagacaatccttcaatttcttttaaaatagagacaatttggttcctcctatcagctgtgtgtttttcgt |
13339169 |
T |
|
| Q |
120 |
gcacaaaacaagaagtgaagacttgtttcatattctcaacaacattagcataaatctcacccaatttgttcaatgaatttgacatgctatcagaagcatc |
219 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13339170 |
gcacaaaacaagaagtaaagacttgtttcatattctcaacaccattagcataaatctcacccaatttgttcaatgaatttgacatgctatcagaagcatc |
13339269 |
T |
|
| Q |
220 |
atcgttatacttcacccttttccccccac |
248 |
Q |
| |
|
||| ||||||||||||||||| ||||||| |
|
|
| T |
13339270 |
atcattatacttcaccctttttcccccac |
13339298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 20320378 - 20320261
Alignment:
| Q |
20 |
ataagcataccagccattaccacttcggcatcagacagtcgttcaatttcttttaaaatagagacaatctggttactcctatcagctgtgtgtttctcgt |
119 |
Q |
| |
|
|||| |||||||||| ||||||| || || | |||| || ||| ||||||||||||| |||||||| ||||| ||||||||||||||| | ||||||| |
|
|
| T |
20320378 |
ataaccataccagcccttaccacatcaacagcggacaatccttctatttcttttaaaagagagacaacttggttcctcctatcagctgtgagcttctcgt |
20320279 |
T |
|
| Q |
120 |
gcacaaaacaagaagtga |
137 |
Q |
| |
|
||| ||||||||| |||| |
|
|
| T |
20320278 |
gcataaaacaagacgtga |
20320261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 34151123 - 34151006
Alignment:
| Q |
20 |
ataagcataccagccattaccacttcggcatcagacagtcgttcaatttcttttaaaatagagacaatctggttactcctatcagctgtgtgtttctcgt |
119 |
Q |
| |
|
|||| |||||||||| ||||||| || || | |||| || ||| ||||||||||||| |||||||| ||||| ||||||||||||||| | ||||||| |
|
|
| T |
34151123 |
ataaccataccagcccttaccacatcaacagcggacaatccttctatttcttttaaaagagagacaacttggttcctcctatcagctgtgagcttctcgt |
34151024 |
T |
|
| Q |
120 |
gcacaaaacaagaagtga |
137 |
Q |
| |
|
||| ||||||||| |||| |
|
|
| T |
34151023 |
gcataaaacaagacgtga |
34151006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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