View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14301_low_2 (Length: 271)
Name: NF14301_low_2
Description: NF14301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14301_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 17 - 256
Target Start/End: Complemental strand, 33602388 - 33602149
Alignment:
| Q |
17 |
tttgaaatgtgaaaacacgaagtggccagttttacttcctagttcaaattagatttgtgtggtggaatcactagcgctgaagctggttctggttggcttg |
116 |
Q |
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| T |
33602388 |
tttgaaatgtgaaaacacgaagtggccagttttacttcctagttcaaattagatttgtgtggtggaatcactagcgctgaagctggttctggttggcttg |
33602289 |
T |
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| Q |
117 |
cttttagtgcaaaagattttccttattgcgattaaacctccccggttcaaattgccggttgtctgcctatcaatatccatcatcaccaatattacatgca |
216 |
Q |
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| T |
33602288 |
cttttagtgcaaaagattttccttattgcgattaaacctccccggttcaaattgccggttgtctgcctatcaatatccatcatcaccaatattacatgca |
33602189 |
T |
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| Q |
217 |
ccaaattaaaatgattttcaacccaagcacatccaattgt |
256 |
Q |
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| T |
33602188 |
ccaaattaaaatgattttcaacccaagcacatccaattgt |
33602149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 33576314 - 33576407
Alignment:
| Q |
17 |
tttgaaatgtgaaaacacgaagtggccagttttacttcctagttcaaattagatttgtgtggtggaatcactagcgctgaagctggttctggtt |
110 |
Q |
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| T |
33576314 |
tttgaaatgtgaaaacacgaagtggtcagttttacttcctagttcacattggatttgtgtggtggactcactagcgttgaagctagttatggtt |
33576407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 36 - 130
Target Start/End: Complemental strand, 10517331 - 10517238
Alignment:
| Q |
36 |
aagtggccagttttacttcctagttcaaattagatttgtgtggtggaatcactagcgctgaagctggttctggttggcttgcttttagtgcaaaa |
130 |
Q |
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| T |
10517331 |
aagtggtcagttttacttcctagttcacattggatttgtgatgtg-aattaccagcgttgaagctggttctggttggcttgctattagtgcaaaa |
10517238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 193
Target Start/End: Original strand, 9080375 - 9080489
Alignment:
| Q |
79 |
tggaatcactagcgctgaagctggttctggttggcttgcttttagtgcaaaagattttccttattgcgattaaacctccccggttcaaattgccggttgt |
178 |
Q |
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| T |
9080375 |
tggaattactagagttgaagctggttatctttggcgttcttttagcgcaaaaggttttccttgttgggaatcaacctccctagttctagttgccagttgt |
9080474 |
T |
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| Q |
179 |
ctgcctatcaatatc |
193 |
Q |
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| T |
9080475 |
ttgcctatcaatatc |
9080489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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