View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14302_low_3 (Length: 258)
Name: NF14302_low_3
Description: NF14302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14302_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 39077580 - 39077337
Alignment:
| Q |
1 |
aagaaacagaaacacaatagaactatctttacaaattcaaagacacgaaatttatacaagaggattaatgggaatgaagagcacaggaggagaaatagtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39077580 |
aagaaacagaaacacaatagaactatctttacaaattcaaagacacaaaatttatacaagaggattaatgggaatgaagagcacaggaggagaaatagtt |
39077481 |
T |
|
| Q |
101 |
caagttcaaggaggccacattgtaagggcaacaggtagaaaagacagacatagtaaggtatacactgcgaaaggtcctcgtgatcgacgtgttcgattat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39077480 |
caagttcaaggaggccacattgtaagggcgacaggtagaaaagacagacatagtaaggtatacactgcgaaaggtcctcgtgatcgacgtgttcgattat |
39077381 |
T |
|
| Q |
201 |
cagcacacacagcaattcaattctatgatgttcaagaccgtctc |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39077380 |
cagcacacacagcaattcaattctatgatgttcaagaccgtctc |
39077337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 237
Target Start/End: Complemental strand, 30768521 - 30768370
Alignment:
| Q |
86 |
ggaggagaaatagttcaagttcaaggaggccacattgtaagggcaacaggtagaaaagacagacatagtaaggtatacactgcgaaaggtcctcgtgatc |
185 |
Q |
| |
|
|||||||| ||||||||||| ||||||| ||||| || | || || |||| |||||| | || || ||||| ||||| | ||||||||||| |||| |
|
|
| T |
30768521 |
ggaggagagatagttcaagtagaaggaggacacatagttcgagccaccggtaaaaaagatcgtcacagcaaggtttacacatcaaaaggtcctcgcgatc |
30768422 |
T |
|
| Q |
186 |
gacgtgttcgattatcagcacacacagcaattcaattctatgatgttcaaga |
237 |
Q |
| |
|
| | |||||| | |||||||||||||| || ||||||| ||||||||||| |
|
|
| T |
30768421 |
gcagggttcgactctcagcacacacagccatcgaattctacgatgttcaaga |
30768370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University