View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14303_high_1 (Length: 609)
Name: NF14303_high_1
Description: NF14303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14303_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 17 - 598
Target Start/End: Original strand, 14648180 - 14648759
Alignment:
| Q |
17 |
aaaaggaagatcaacgaaattagaaatggtttaatatagtttttctttaaagatggataaatataggttagaaacgactaattaatcaatctcacgttga |
116 |
Q |
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| T |
14648180 |
aaaaggaagatcaacgaaattagaaatggtttaatatagtttttctttaaagatggataaatataggttagaaacgactaattaatcaatctcacgttga |
14648279 |
T |
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| Q |
117 |
tttgtgtacacattctgtaggagttggtaagatagatgaaagttataagtgttttgtttcaagttcattatttttactctaaaaacataatttttctcat |
216 |
Q |
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| T |
14648280 |
tttgtgtacacattctgtaggagttggtaagatagatgaaagttacaagggttttgtttcaagttcattatttttactctaaaaacataatttttctcat |
14648379 |
T |
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| Q |
217 |
gaatatataaggatgagttttaaatttaggtgctttttaaaatattagttggcttgaaaaattagttaacatttatttttaagagaaaaatttatgtgta |
316 |
Q |
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| T |
14648380 |
gaatatataaggatgagttttaaatttaggtgctttttaaaatattagttggcttgaaaaattagttaacatttatttttaagagaaaaatttatgtgta |
14648479 |
T |
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| Q |
317 |
gttgtacatgaattattcttatcttaatgagaaatagttttcacccnnnnnnnctcgataaattgtctgtttctcatgaatcttttatatatcaatcaga |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
14648480 |
gttgtacatgaattattcttatcttaatgagaaatagttttcaccctttttttctcgataaattgtctgtttctcatgaatcttttatatatcaaacaga |
14648579 |
T |
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| Q |
417 |
aaatttaacaaacgtataagttataacacacatccttcaaaataaacttataacacacataagaatgcaaaaaatttactattttattcttagaaattta |
516 |
Q |
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| T |
14648580 |
aaatttaacaaacgtataagttataacacacatccttcaaaaaaaacttata--acacataagaatgcaaaaattttactattttattcttagaaattta |
14648677 |
T |
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| Q |
517 |
caaagataatttgaaataaacataatagtgtactagaatatgacccattattgccttaaaaaatatatgactcgttattcat |
598 |
Q |
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| T |
14648678 |
caaagataatttgaaataaacataatagtgtactagaatatgacccattattgccctaaaaaatatatgactcgttattcat |
14648759 |
T |
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