View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14303_low_12 (Length: 218)

Name: NF14303_low_12
Description: NF14303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14303_low_12
NF14303_low_12
[»] chr6 (11 HSPs)
chr6 (1-202)||(31189455-31189656)
chr6 (1-202)||(31145397-31145598)
chr6 (1-202)||(31171710-31171911)
chr6 (1-202)||(31201262-31201463)
chr6 (1-202)||(30992470-30992671)
chr6 (2-202)||(31224493-31224693)
chr6 (1-202)||(30960988-30961189)
chr6 (1-202)||(30944983-30945184)
chr6 (1-202)||(30955243-30955444)
chr6 (1-202)||(31214224-31214425)
chr6 (1-201)||(31229774-31229974)
[»] chr1 (6 HSPs)
chr1 (1-54)||(49215559-49215612)
chr1 (1-72)||(49728717-49728788)
chr1 (1-55)||(49683286-49683340)
chr1 (140-174)||(49710777-49710811)
chr1 (136-202)||(49725165-49725231)
chr1 (140-173)||(49683168-49683201)
[»] chr7 (3 HSPs)
chr7 (143-202)||(31618457-31618516)
chr7 (136-201)||(31585590-31585655)
chr7 (4-48)||(31614589-31614633)


Alignment Details
Target: chr6 (Bit Score: 181; Significance: 6e-98; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 31189455 - 31189656
Alignment:
Q  1 catcattccataactataaacatcagatttgtgtgaaactcctccaaaatgtctattccacacttctggagctacatatcccattgtccctctttgatct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31189455 catcattccataactataaacatcagatttgtgtgaaactcctccaaaatgtctattccacacttctggagctacatatcccattgtccctctttgatct 31189554  T
Q  101 gtcatcgaaataatgctctcnnnnnnnggacagagttttgcaagtccaaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggtt 200  Q
    ||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31189555 gtcatcgaaataatgctctctttttttggacagagttttgcaagtccaaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggtt 31189654  T
Q  201 tt 202  Q
    ||    
T  31189655 tt 31189656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 31145397 - 31145598
Alignment:
Q  1 catcattccataactataaacatcagatttgtgtgaaactcctccaaaatgtctattccacacttctggagctacatatcccattgtccctctttgatct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31145397 catcattccataactataaacatcagatttgtgtgaaactcctccaaaatgtctattccacacttctggagctacatatcccattgtccctctttgatct 31145496  T
Q  101 gtcatcgaaataatgctctcnnnnnnnggacagagttttgcaagtccaaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggtt 200  Q
    | ||| ||||||||||||||       |||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||    
T  31145497 gacattgaaataatgctctcttgttttggacagagttttgcaagtccaaaatctgaaatctttggacataagttttcatctaaaagaatgttatgtggtt 31145596  T
Q  201 tt 202  Q
    ||    
T  31145597 tt 31145598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 31171710 - 31171911
Alignment:
Q  1 catcattccataactataaacatcagatttgtgtgaaactcctccaaaatgtctattccacacttctggagctacatatcccattgtccctctttgatct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31171710 catcattccataactataaacatcagatttgtgtgaaactcctccaaaatgtctattccacacttctggagctacatatcccattgtccctctttgatct 31171809  T
Q  101 gtcatcgaaataatgctctcnnnnnnnggacagagttttgcaagtccaaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggtt 200  Q
    | ||| ||||||||||||||       |||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||    
T  31171810 gacattgaaataatgctctcttgttttggacagagttttgcaagtccaaaatctgaaatctttggacataagttttcatctaaaagaatgttatgtggtt 31171909  T
Q  201 tt 202  Q
    ||    
T  31171910 tt 31171911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 31201262 - 31201463
Alignment:
Q  1 catcattccataactataaacatcagatttgtgtgaaactcctccaaaatgtctattccacacttctggagctacatatcccattgtccctctttgatct 100  Q
    |||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  31201262 catcattccataactataaacatcggacttgtatgaaactcctccaaaatgtctattccacatttctggagctacatatcccatagtccctctttgatct 31201361  T
Q  101 gtcatcgaaataatgctctcnnnnnnnggacagagttttgcaagtccaaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggtt 200  Q
    | ||||||||||||||||||       ||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||    
T  31201362 gacatcgaaataatgctctcgttccttggacaaagttttgcaagtccaaaatctgaaatctttggacaaaaattctcatctaaaagaatattatgtggtt 31201461  T
Q  201 tt 202  Q
    ||    
T  31201462 tt 31201463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 30992671 - 30992470
Alignment:
Q  1 catcattccataactataaacatcagatttgtgtgaaactcctccaaaatgtctattccacacttctggagctacatatcccattgtccctctttgatct 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  30992671 catcattccataactataaacatcagacttgtgtgaaactcctccaaaatgtctattccacacttctggagctacataccccattgtccctctttgatcc 30992572  T
Q  101 gtcatcgaaataatgctctcnnnnnnnggacagagttttgcaagtccaaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggtt 200  Q
    | |||||||| |||||| ||        | || || ||||| |||||||||||||| || |||||||| |||||||||||||||||||||||||||||||    
T  30992571 gacatcgaaacaatgctgtctttcttcaggcaaagctttgccagtccaaaatctgagatctttggacaaaaattctcatctaaaagaatgttatgtggtt 30992472  T
Q  201 tt 202  Q
    ||    
T  30992471 tt 30992470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 2 - 202
Target Start/End: Complemental strand, 31224693 - 31224493
Alignment:
Q  2 atcattccataactataaacatcagatttgtgtgaaactcctccaaaatgtctattccacacttctggagctacatatcccattgtccctctttgatctg 101  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  31224693 atcattccataactataaacatcagacttgtgtgaaactcctccaaaatgtctattccacacttctggagctacataccccattgttcctctttgatctg 31224594  T
Q  102 tcatcgaaataatgctctcnnnnnnnggacagagttttgcaagtccaaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggttt 201  Q
     ||| |||| |||||| ||        |||| |||||||||||||||||||||||||| || ||||||||||| ||||||||||| ||||| ||||||||    
T  31224593 acattgaaacaatgctttctttcctgagacatagttttgcaagtccaaaatctgaaatcttcggacataaattatcatctaaaaggatgttgtgtggttt 31224494  T
Q  202 t 202  Q
    |    
T  31224493 t 31224493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 30961189 - 30960988
Alignment:
Q  1 catcattccataactataaacatcagatttgtgtgaaactcctccaaaatgtctattccacacttctggagctacatatcccattgtccctctttgatct 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||     
T  30961189 catcattccataactataaacatcagacttgtgtgaaactcctccaaaatgtctattccacacttcaggagctacataccccattgtccctctttgatcc 30961090  T
Q  101 gtcatcgaaataatgctctcnnnnnnnggacagagttttgcaagtccaaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggtt 200  Q
    | |||||||| |||||| ||        | || || ||||| |||||||||||||| || |||||||| |||||||||||||||||||||||||||||||    
T  30961089 gacatcgaaacaatgctgtctttcttcaggcaaagctttgccagtccaaaatctgagatctttggacaaaaattctcatctaaaagaatgttatgtggtt 30960990  T
Q  201 tt 202  Q
    ||    
T  30960989 tt 30960988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 30945184 - 30944983
Alignment:
Q  1 catcattccataactataaacatcagatttgtgtgaaactcctccaaaatgtctattccacacttctggagctacatatcccattgtccctctttgatct 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| | ||| ||||||  || |    
T  30945184 catcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactgttcctcttgcattt 30945085  T
Q  101 gtcatcgaaataatgctctcnnnnnnnggacagagttttgcaagtccaaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggtt 200  Q
    | |||  ||||| |||||||        ||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||    
T  30945084 gacatgaaaatagtgctctctttcttgagacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgcggtt 30944985  T
Q  201 tt 202  Q
    ||    
T  30944984 tt 30944983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 30955444 - 30955243
Alignment:
Q  1 catcattccataactataaacatcagatttgtgtgaaactcctccaaaatgtctattccacacttctggagctacatatcccattgtccctctttgatct 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| | ||| ||||||  || |    
T  30955444 catcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactgttcctcttgcattt 30955345  T
Q  101 gtcatcgaaataatgctctcnnnnnnnggacagagttttgcaagtccaaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggtt 200  Q
    | |||  | ||| |||||||        ||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  30955344 gacatgaatatagtgctctctttctcgagacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggtt 30955245  T
Q  201 tt 202  Q
    ||    
T  30955244 tt 30955243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 31214425 - 31214224
Alignment:
Q  1 catcattccataactataaacatcagatttgtgtgaaactcctccaaaatgtctattccacacttctggagctacatatcccattgtccctctttgatct 100  Q
    ||||||||| ||||||||||||||||| ||||  ||||| |||||||| | |||||||||||  || ||||||||||||||||| || |||||   | ||    
T  31214425 catcattccgtaactataaacatcagacttgtacgaaacgcctccaaagtttctattccacaactcaggagctacatatcccatcgttcctctagcacct 31214326  T
Q  101 gtcatcgaaataatgctctcnnnnnnnggacagagttttgcaagtccaaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggtt 200  Q
    | ||||||||||||||| ||        |||| ||| ||||||||||||||||||| || |||||||| ||||| |||||||| | ||| ||||||||||    
T  31214325 gacatcgaaataatgctttctttcttgagacaaagtcttgcaagtccaaaatctgatatctttggacaaaaattttcatctaataaaatattatgtggtt 31214226  T
Q  201 tt 202  Q
    ||    
T  31214225 tt 31214224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 31229974 - 31229774
Alignment:
Q  1 catcattccataactataaacatcagatttgtgtgaaactcctccaaaatgtctattccacacttctggagctacatatcccattgtccctctttgatct 100  Q
    ||||||||||||||||||||| ||||| ||||| ||||||| |||||||| | ||||||| |  || ||||||||||| ||||||||||||||    |||    
T  31229974 catcattccataactataaacgtcagacttgtgcgaaactcatccaaaatttatattccataactcaggagctacataccccattgtccctctagcgtct 31229875  T
Q  101 gtcatcgaaataatgctctcnnnnnnnggacagagttttgcaagtccaaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggtt 200  Q
    | ||| ||||||||||||||        | || ||| ||| ||||||||||||||| || |||||||| |||||||||| ||| || |||||||||||||    
T  31229874 gacatagaaataatgctctctttcttatggcaaagtcttgaaagtccaaaatctgatatctttggacaaaaattctcatataagaggatgttatgtggtt 31229775  T
Q  201 t 201  Q
    |    
T  31229774 t 31229774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 49215612 - 49215559
Alignment:
Q  1 catcattccataactataaacatcagatttgtgtgaaactcctccaaaatgtct 54  Q
    |||||||||||||||||||||||| ||||| ||||| || || |||||||||||    
T  49215612 catcattccataactataaacatctgatttatgtgacaccccaccaaaatgtct 49215559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 49728788 - 49728717
Alignment:
Q  1 catcattccataactataaacatcagatttgtgtgaaactcctccaaaatgtctattccacacttctggagc 72  Q
    |||||||||||||||||| |||||||||||||| || || || ||||||| ||||    |||||||||||||    
T  49728788 catcattccataactatatacatcagatttgtgagagacgccaccaaaatttctagagaacacttctggagc 49728717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 49683340 - 49683286
Alignment:
Q  1 catcattccataactataaacatcagatttgtgtgaaactcctccaaaatgtcta 55  Q
    ||||||||||||||| || ||||| ||||||||||| || || ||||||||||||    
T  49683340 catcattccataactgtagacatctgatttgtgtgacaccccaccaaaatgtcta 49683286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 174
Target Start/End: Complemental strand, 49710811 - 49710777
Alignment:
Q  140 gcaagtccaaaatctgaaatttttggacataaatt 174  Q
    ||||||||||||||||||||||||||||| |||||    
T  49710811 gcaagtccaaaatctgaaatttttggacaaaaatt 49710777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 202
Target Start/End: Complemental strand, 49725231 - 49725165
Alignment:
Q  136 ttttgcaagtccaaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggtttt 202  Q
    |||||||||||||||||| |||||| | ||    ||||||||||| |||||||||||||| ||||||    
T  49725231 ttttgcaagtccaaaatccgaaattctggggttgaaattctcatccaaaagaatgttatgaggtttt 49725165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Complemental strand, 49683201 - 49683168
Alignment:
Q  140 gcaagtccaaaatctgaaatttttggacataaat 173  Q
    ||||||||||||||||||||||||||||| ||||    
T  49683201 gcaagtccaaaatctgaaatttttggacacaaat 49683168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 202
Target Start/End: Original strand, 31618457 - 31618516
Alignment:
Q  143 agtccaaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggtttt 202  Q
    |||||||||||||| ||||||||||| ||||  ||||| ||||||||||| || ||||||    
T  31618457 agtccaaaatctgagatttttggacaaaaatcttcatccaaaagaatgttttgaggtttt 31618516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 31585590 - 31585655
Alignment:
Q  136 ttttgcaagtccaaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggttt 201  Q
    |||||| ||||||||||| || ||||||||||| ||||  ||||| ||||||||||| || |||||    
T  31585590 ttttgctagtccaaaatcagatatttttggacaaaaatcttcatccaaaagaatgttttggggttt 31585655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 31614589 - 31614633
Alignment:
Q  4 cattccataactataaacatcagatttgtgtgaaactcctccaaa 48  Q
    ||||||||||||||| |||||||||||||  |||||||| |||||    
T  31614589 cattccataactatatacatcagatttgtaagaaactccgccaaa 31614633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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