View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14303_low_3 (Length: 456)

Name: NF14303_low_3
Description: NF14303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14303_low_3
NF14303_low_3
[»] chr6 (8 HSPs)
chr6 (65-440)||(16404786-16405169)
chr6 (74-118)||(3172769-3172813)
chr6 (71-118)||(33549135-33549182)
chr6 (39-118)||(12234473-12234552)
chr6 (71-118)||(14557993-14558040)
chr6 (132-172)||(16406022-16406061)
chr6 (74-126)||(28363960-28364012)
chr6 (82-118)||(31623000-31623036)
[»] chr8 (8 HSPs)
chr8 (74-126)||(30774737-30774789)
chr8 (71-118)||(968393-968440)
chr8 (71-118)||(16852371-16852418)
chr8 (68-119)||(18546357-18546408)
chr8 (72-126)||(11928730-11928784)
chr8 (71-118)||(33017245-33017292)
chr8 (73-118)||(29858049-29858094)
chr8 (74-118)||(12281525-12281569)
[»] scaffold0258 (1 HSPs)
scaffold0258 (71-118)||(15321-15368)
[»] chr5 (5 HSPs)
chr5 (71-118)||(16773838-16773885)
chr5 (82-126)||(4793097-4793141)
chr5 (71-118)||(14495803-14495850)
chr5 (71-126)||(22020860-22020915)
chr5 (74-126)||(24895058-24895110)
[»] chr3 (12 HSPs)
chr3 (71-118)||(10445137-10445184)
chr3 (71-118)||(21960582-21960629)
chr3 (74-126)||(45308903-45308955)
chr3 (71-118)||(30510197-30510244)
chr3 (71-118)||(32651436-32651483)
chr3 (135-172)||(5303525-5303562)
chr3 (73-118)||(8051245-8051290)
chr3 (71-111)||(3427551-3427591)
chr3 (85-129)||(28531070-28531114)
chr3 (71-111)||(31608522-31608562)
chr3 (71-115)||(34928939-34928983)
chr3 (74-118)||(44743856-44743900)
[»] chr2 (13 HSPs)
chr2 (71-126)||(29503294-29503349)
chr2 (71-118)||(39715023-39715070)
chr2 (71-119)||(27244338-27244386)
chr2 (71-118)||(4262300-4262347)
chr2 (71-118)||(7799033-7799080)
chr2 (71-118)||(41504934-41504981)
chr2 (71-118)||(42327393-42327440)
chr2 (68-118)||(28846722-28846772)
chr2 (72-126)||(32687504-32687558)
chr2 (71-125)||(33962782-33962836)
chr2 (73-118)||(12086129-12086174)
chr2 (71-111)||(14500315-14500355)
chr2 (71-115)||(33569856-33569900)
[»] chr1 (3 HSPs)
chr1 (71-118)||(10526854-10526901)
chr1 (71-118)||(50901613-50901660)
chr1 (71-117)||(44126427-44126473)
[»] scaffold0004 (1 HSPs)
scaffold0004 (71-125)||(81562-81616)
[»] chr7 (9 HSPs)
chr7 (68-118)||(20335826-20335876)
chr7 (72-106)||(25242039-25242073)
chr7 (71-118)||(5668569-5668616)
chr7 (71-118)||(17041010-17041057)
chr7 (71-118)||(22760894-22760941)
chr7 (71-118)||(26459408-26459455)
chr7 (71-118)||(39631875-39631922)
chr7 (74-126)||(20952150-20952202)
chr7 (74-126)||(45709709-45709761)
[»] scaffold0009 (1 HSPs)
scaffold0009 (73-125)||(145913-145965)
[»] scaffold0299 (1 HSPs)
scaffold0299 (71-118)||(11559-11606)
[»] scaffold0180 (1 HSPs)
scaffold0180 (71-118)||(19960-20007)
[»] chr4 (10 HSPs)
chr4 (71-118)||(23377987-23378034)
chr4 (71-126)||(30938217-30938272)
chr4 (71-118)||(37109349-37109396)
chr4 (71-118)||(39509101-39509148)
chr4 (71-126)||(53496900-53496955)
chr4 (71-118)||(55427198-55427245)
chr4 (72-118)||(31759657-31759703)
chr4 (72-126)||(41346962-41347016)
chr4 (137-173)||(9780321-9780357)
chr4 (82-118)||(51954145-51954181)


Alignment Details
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 65 - 440
Target Start/End: Complemental strand, 16405169 - 16404786
Alignment:
65 acaggtgagaatcgaatctgagacctcgaggaggagcatacttccaggtcccaaactaatacgaatgaatttgttaatattacatgagatagacatatat 164  Q
    |||||||||||||||| |||||||||||||||| |||| ||| ||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||    
16405169 acaggtgagaatcgaaactgagacctcgaggagaagcacactcccaggtcccaaaccaatatcaatgaatttgttaatattacatgagatagacatatat 16405070  T
165 taaccc-------tatgcagatgattgagtttagtggtatgggctaaactcccacaatatgctaaaccaattgagtttgaattctnnnnnnnnnn-gtgt 256  Q
    ||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||           ||||    
16405069 taaccccaataattatgcagatgattgagtttagtggtatgggctaaactcccacaatatgctaaaccaattgagtttgaatcctaaaaaaaaaatgtgt 16404970  T
257 gacacatatgcgaaaacaaaaaggaatggtcttaaattaacatagctgctgatatggacagcttgatattaaacagtgaccaagttctgtccttaaaata 356  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
16404969 gacacatatgcgaaaacaaaaaggaatggtcttaaattaacatagctggtgatatggacaacttgatattaaacagtgaccaagttctgtccttaaaata 16404870  T
357 taccaaactagatgccaaacttggagtacaagaagtaaaaaacaaatttgatttgggttttgaagattctcactgttacactat 440  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||    
16404869 taccaaactagatgccaaacttggagtacaagaagtcaaaaacaaatttgatttgggttttaaagattctcacagttacactat 16404786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 3172769 - 3172813
Alignment:
74 aatcgaatctgagacctcgaggaggagcatacttccaggtcccaa 118  Q
    |||||||||||||||||||| |||||||||||| |||||||||||    
3172769 aatcgaatctgagacctcgatgaggagcatactcccaggtcccaa 3172813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 33549182 - 33549135
Alignment:
71 gagaatcgaatctgagacctcgaggaggagcatacttccaggtcccaa 118  Q
    |||||||||| ||||||||||||||||||||| ||| |||||||||||    
33549182 gagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaa 33549135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 118
Target Start/End: Original strand, 12234473 - 12234552
Alignment:
39 agctaatttaacccatctaacttcaaacaggtgagaatcgaatctgagacctcgaggaggagcatacttccaggtcccaa 118  Q
    |||||| ||| ||||||||| || | || || |||||||||| |||||||||||||  |||||| ||| |||||||||||    
12234473 agctaaattatcccatctaaattgacactggagagaatcgaacctgagacctcgagagggagcacactcccaggtcccaa 12234552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 14558040 - 14557993
Alignment:
71 gagaatcgaatctgagacctcgaggaggagcatacttccaggtcccaa 118  Q
    |||||||||| ||||||||  ||||||||||| |||||||||||||||    
14558040 gagaatcgaacctgagacccggaggaggagcacacttccaggtcccaa 14557993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 16406022 - 16406061
Alignment:
132 aatttgttaatattacatgagatagacatatattaacccta 172  Q
    ||||||||||||||||||| |||| ||||||||||||||||    
16406022 aatttgttaatattacatg-gataaacatatattaacccta 16406061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 28364012 - 28363960
Alignment:
74 aatcgaatctgagacctcgaggaggagcatacttccaggtcccaaactaatac 126  Q
    ||||||||||||||||| ||||||||||| |||  ||| |||||||| |||||    
28364012 aatcgaatctgagaccttgaggaggagcacactcgcagatcccaaaccaatac 28363960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 118
Target Start/End: Original strand, 31623000 - 31623036
Alignment:
82 ctgagacctcgaggaggagcatacttccaggtcccaa 118  Q
    ||||||||||||||||||||| ||| |||||||||||    
31623000 ctgagacctcgaggaggagcacactcccaggtcccaa 31623036  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 30774737 - 30774789
Alignment:
74 aatcgaatctgagacctcgaggaggagcatacttccaggtcccaaactaatac 126  Q
    |||||||||||||||||||||||||| || |||||||| |||||||| |||||    
30774737 aatcgaatctgagacctcgaggaggaacacacttccagatcccaaaccaatac 30774789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 968440 - 968393
Alignment:
71 gagaatcgaatctgagacctcgaggaggagcatacttccaggtcccaa 118  Q
    |||||||||| ||||||||||||||||||||| ||| |||||||||||    
968440 gagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaa 968393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 16852418 - 16852371
Alignment:
71 gagaatcgaatctgagacctcgaggaggagcatacttccaggtcccaa 118  Q
    |||||||||| ||||||||||||||||||||| ||| |||||||||||    
16852418 gagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaa 16852371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 68 - 119
Target Start/End: Original strand, 18546357 - 18546408
Alignment:
68 ggtgagaatcgaatctgagacctcgaggaggagcatacttccaggtcccaaa 119  Q
    ||||||||||||| |||||||||||||||||||||| ||  |||||||||||    
18546357 ggtgagaatcgaacctgagacctcgaggaggagcatgctctcaggtcccaaa 18546408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 126
Target Start/End: Original strand, 11928730 - 11928784
Alignment:
72 agaatcgaatctgagacctcgaggaggagcatacttccaggtcccaaactaatac 126  Q
    ||||||||| ||||||||||||||||||||| ||||||||||   ||||||||||    
11928730 agaatcgaacctgagacctcgaggaggagcacacttccaggttataaactaatac 11928784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 33017292 - 33017245
Alignment:
71 gagaatcgaatctgagacctcgaggaggagcatacttccaggtcccaa 118  Q
    |||||||||| ||||||||| ||||||||||| |||||||||| ||||    
33017292 gagaatcgaacctgagaccttgaggaggagcacacttccaggttccaa 33017245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 118
Target Start/End: Original strand, 29858049 - 29858094
Alignment:
73 gaatcgaatctgagacctcgaggaggagcatacttccaggtcccaa 118  Q
    |||||||| ||||||||||||||||||||| ||| || ||||||||    
29858049 gaatcgaacctgagacctcgaggaggagcacactccctggtcccaa 29858094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 12281569 - 12281525
Alignment:
74 aatcgaatctgagacctcgaggaggagcatacttccaggtcccaa 118  Q
    ||||||||||||||||||||||||| ||| |||  ||||||||||    
12281569 aatcgaatctgagacctcgaggaggggcacactctcaggtcccaa 12281525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 15321 - 15368
Alignment:
71 gagaatcgaatctgagacctcgaggaggagcatacttccaggtcccaa 118  Q
    |||||||||| ||||||||||||||||||||| ||| |||||||||||    
15321 gagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaa 15368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 16773885 - 16773838
Alignment:
71 gagaatcgaatctgagacctcgaggaggagcatacttccaggtcccaa 118  Q
    |||||||||| ||||||||||||||||||||| ||| |||||||||||    
16773885 gagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaa 16773838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 82 - 126
Target Start/End: Original strand, 4793097 - 4793141
Alignment:
82 ctgagacctcgaggaggagcatacttccaggtcccaaactaatac 126  Q
    ||||||||||||||||||||| ||| ||||||||||||| |||||    
4793097 ctgagacctcgaggaggagcacactcccaggtcccaaaccaatac 4793141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 14495803 - 14495850
Alignment:
71 gagaatcgaatctgagacctcgaggaggagcatacttccaggtcccaa 118  Q
    ||||||| |||||||||||||||||||||||| ||| |||| ||||||    
14495803 gagaatcaaatctgagacctcgaggaggagcacactcccagatcccaa 14495850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 126
Target Start/End: Original strand, 22020860 - 22020915
Alignment:
71 gagaatcgaatctgagacctcgaggaggagcatacttccaggtcccaaactaatac 126  Q
    |||||||||||||||||| || |||||||||| ||| |||| |||||| |||||||    
22020860 gagaatcgaatctgagacttcaaggaggagcacactcccagatcccaagctaatac 22020915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 24895110 - 24895058
Alignment:
74 aatcgaatctgagacctcgaggaggagcatacttccaggtcccaaactaatac 126  Q
    ||||||| |||||| || ||||||||||||||| | ||||||||| |||||||    
24895110 aatcgaacctgagagcttgaggaggagcatactccaaggtcccaatctaatac 24895058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 10445137 - 10445184
Alignment:
71 gagaatcgaatctgagacctcgaggaggagcatacttccaggtcccaa 118  Q
    |||||||||| ||||||||||||||||||||| ||| |||||||||||    
10445137 gagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaa 10445184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 21960629 - 21960582
Alignment:
71 gagaatcgaatctgagacctcgaggaggagcatacttccaggtcccaa 118  Q
    |||||||||||||||||||||||||||||||| |||  ||||||||||    
21960629 gagaatcgaatctgagacctcgaggaggagcacactctcaggtcccaa 21960582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 45308903 - 45308955
Alignment:
74 aatcgaatctgagacctcgaggaggagcatacttccaggtcccaaactaatac 126  Q
    ||||||| |||||||||||||||||||||||||  || ||||||||| |||||    
45308903 aatcgaacctgagacctcgaggaggagcatactcacaagtcccaaaccaatac 45308955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 30510197 - 30510244
Alignment:
71 gagaatcgaatctgagacctcgaggaggagcatacttccaggtcccaa 118  Q
    |||||||||| ||||||||||||| ||||||||||| | |||||||||    
30510197 gagaatcgaacctgagacctcgagaaggagcatactcctaggtcccaa 30510244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 32651436 - 32651483
Alignment:
71 gagaatcgaatctgagacctcgaggaggagcatacttccaggtcccaa 118  Q
    ||||||||||||||||| || ||||||||||| ||| |||||||||||    
32651436 gagaatcgaatctgagatcttgaggaggagcacactcccaggtcccaa 32651483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 5303562 - 5303525
Alignment:
135 ttgttaatattacatgagatagacatatattaacccta 172  Q
    |||||||||||||||||| || ||||||||||||||||    
5303562 ttgttaatattacatgaggtaaacatatattaacccta 5303525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 8051290 - 8051245
Alignment:
73 gaatcgaatctgagacctcgaggaggagcatacttccaggtcccaa 118  Q
    ||||||||  ||||||||||||||| |||||||| |||||||||||    
8051290 gaatcgaacttgagacctcgaggagaagcatactgccaggtcccaa 8051245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 3427551 - 3427591
Alignment:
71 gagaatcgaatctgagacctcgaggaggagcatacttccag 111  Q
    |||||||||||||||||||| ||||||||||| ||| ||||    
3427551 gagaatcgaatctgagaccttgaggaggagcacactcccag 3427591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 129
Target Start/End: Original strand, 28531070 - 28531114
Alignment:
85 agacctcgaggaggagcatacttccaggtcccaaactaatacgaa 129  Q
    |||||||||||||||||||||| |||| |||||| | ||||||||    
28531070 agacctcgaggaggagcatactcccagatcccaagccaatacgaa 28531114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 31608522 - 31608562
Alignment:
71 gagaatcgaatctgagacctcgaggaggagcatacttccag 111  Q
    ||||||| |||||||||||||||||||||||| ||| ||||    
31608522 gagaatcaaatctgagacctcgaggaggagcacactcccag 31608562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 34928939 - 34928983
Alignment:
71 gagaatcgaatctgagacctcgaggaggagcatacttccaggtcc 115  Q
    ||||||||||||||||||||  ||||||||||||||  |||||||    
34928939 gagaatcgaatctgagaccttaaggaggagcatactctcaggtcc 34928983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 44743856 - 44743900
Alignment:
74 aatcgaatctgagacctcgaggaggagcatacttccaggtcccaa 118  Q
    ||||||| ||||||||||||||||||||| ||| |||| ||||||    
44743856 aatcgaacctgagacctcgaggaggagcacactcccagatcccaa 44743900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 126
Target Start/End: Complemental strand, 29503349 - 29503294
Alignment:
71 gagaatcgaatctgagacctcgaggaggagcatacttccaggtcccaaactaatac 126  Q
    |||||||||| ||||||||| ||||||||||| ||| ||||||||||||| |||||    
29503349 gagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaaaccaatac 29503294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 39715070 - 39715023
Alignment:
71 gagaatcgaatctgagacctcgaggaggagcatacttccaggtcccaa 118  Q
    |||||||||| ||||||||||||||||||||| ||| |||||||||||    
39715070 gagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaa 39715023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 27244386 - 27244338
Alignment:
71 gagaatcgaatctgagacctcgaggaggagcatacttccaggtcccaaa 119  Q
    |||||||||| || | |||||||||||||||||||| ||||||||||||    
27244386 gagaatcgaaccttaaacctcgaggaggagcatactcccaggtcccaaa 27244338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 4262300 - 4262347
Alignment:
71 gagaatcgaatctgagacctcgaggaggagcatacttccaggtcccaa 118  Q
    |||||||||| ||||||||| ||||||||||| ||| |||||||||||    
4262300 gagaatcgaacctgagaccttgaggaggagcacactgccaggtcccaa 4262347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 7799033 - 7799080
Alignment:
71 gagaatcgaatctgagacctcgaggaggagcatacttccaggtcccaa 118  Q
    ||||||||||||||||| |||||||||||||| ||| ||| |||||||    
7799033 gagaatcgaatctgagatctcgaggaggagcacactcccaagtcccaa 7799080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 41504934 - 41504981
Alignment:
71 gagaatcgaatctgagacctcgaggaggagcatacttccaggtcccaa 118  Q
    |||||||||||| ||||  ||||||||||||||||| |||||||||||    
41504934 gagaatcgaatcggagatatcgaggaggagcatactcccaggtcccaa 41504981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 42327393 - 42327440
Alignment:
71 gagaatcgaatctgagacctcgaggaggagcatacttccaggtcccaa 118  Q
    |||||||||| ||||||||| ||||||||||| ||| |||||||||||    
42327393 gagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaa 42327440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 118
Target Start/End: Complemental strand, 28846772 - 28846722
Alignment:
68 ggtgagaatcgaatctgagacctcgaggaggagcatacttccaggtcccaa 118  Q
    ||||| ||||||| ||||||| ||||||||||||| ||| |||||||||||    
28846772 ggtgataatcgaacctgagacatcgaggaggagcacactcccaggtcccaa 28846722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 126
Target Start/End: Complemental strand, 32687558 - 32687504
Alignment:
72 agaatcgaatctgagacctcgaggaggagcatacttccaggtcccaaactaatac 126  Q
    ||||||||| |||||||||||||||||| || |||  || |||||||||||||||    
32687558 agaatcgaacctgagacctcgaggaggaacacactctcaagtcccaaactaatac 32687504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 33962782 - 33962836
Alignment:
71 gagaatcgaatctgagacctcgaggaggagcatacttccaggtcccaaactaata 125  Q
    |||||||||||| |||| |||||||||||||| ||| |||| |||||||| ||||    
33962782 gagaatcgaatccgagatctcgaggaggagcacactcccagttcccaaaccaata 33962836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 118
Target Start/End: Original strand, 12086129 - 12086174
Alignment:
73 gaatcgaatctgagacctcgaggaggagcatacttccaggtcccaa 118  Q
    |||||||| | ||||||| ||||||||||| |||||||||||||||    
12086129 gaatcgaacccgagaccttgaggaggagcacacttccaggtcccaa 12086174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 14500355 - 14500315
Alignment:
71 gagaatcgaatctgagacctcgaggaggagcatacttccag 111  Q
    |||||||||||||||||||| ||||||||||| ||| ||||    
14500355 gagaatcgaatctgagacctagaggaggagcacactcccag 14500315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 33569856 - 33569900
Alignment:
71 gagaatcgaatctgagacctcgaggaggagcatacttccaggtcc 115  Q
    |||||||||| ||||||||||||||| ||||| ||||||| ||||    
33569856 gagaatcgaacctgagacctcgaggaagagcacacttccaagtcc 33569900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 10526901 - 10526854
Alignment:
71 gagaatcgaatctgagacctcgaggaggagcatacttccaggtcccaa 118  Q
    |||||||||||||||||||| ||||||||||| ||| |||||||||||    
10526901 gagaatcgaatctgagaccttgaggaggagcaaactcccaggtcccaa 10526854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 50901660 - 50901613
Alignment:
71 gagaatcgaatctgagacctcgaggaggagcatacttccaggtcccaa 118  Q
    ||||||||||| |||||||||||||||||||| ||| |||||||||||    
50901660 gagaatcgaatttgagacctcgaggaggagcacactaccaggtcccaa 50901613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 117
Target Start/End: Complemental strand, 44126473 - 44126427
Alignment:
71 gagaatcgaatctgagacctcgaggaggagcatacttccaggtccca 117  Q
    ||||||| |||||||||||||| ||||||||| ||| ||||||||||    
44126473 gagaatcaaatctgagacctcgtggaggagcacactcccaggtccca 44126427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 81562 - 81616
Alignment:
71 gagaatcgaatctgagacctcgaggaggagcatacttccaggtcccaaactaata 125  Q
    |||||||||||||||||||| ||||||||||| |||||||| | |||||| ||||    
81562 gagaatcgaatctgagaccttgaggaggagcacacttccagattccaaaccaata 81616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 118
Target Start/End: Original strand, 20335826 - 20335876
Alignment:
68 ggtgagaatcgaatctgagacctcgaggaggagcatacttccaggtcccaa 118  Q
    ||||||||||||| ||||||||||||||||||||| ||| ||| |||||||    
20335826 ggtgagaatcgaacctgagacctcgaggaggagcacactcccaagtcccaa 20335876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 106
Target Start/End: Complemental strand, 25242073 - 25242039
Alignment:
72 agaatcgaatctgagacctcgaggaggagcatact 106  Q
    |||||||||||||||||||||||||||||||||||    
25242073 agaatcgaatctgagacctcgaggaggagcatact 25242039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 5668569 - 5668616
Alignment:
71 gagaatcgaatctgagacctcgaggaggagcatacttccaggtcccaa 118  Q
    |||||||||  ||||||||||||||||||||| ||||||| |||||||    
5668569 gagaatcgatcctgagacctcgaggaggagcacacttccatgtcccaa 5668616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 17041010 - 17041057
Alignment:
71 gagaatcgaatctgagacctcgaggaggagcatacttccaggtcccaa 118  Q
    |||||||||| ||||||||| ||||||||||| |||||||| ||||||    
17041010 gagaatcgaacctgagaccttgaggaggagcacacttccagatcccaa 17041057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 22760941 - 22760894
Alignment:
71 gagaatcgaatctgagacctcgaggaggagcatacttccaggtcccaa 118  Q
    |||||||||| ||||||||| ||||||||||| ||| |||||||||||    
22760941 gagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaa 22760894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 26459408 - 26459455
Alignment:
71 gagaatcgaatctgagacctcgaggaggagcatacttccaggtcccaa 118  Q
    |||||||||| ||||||||| ||||||||||| ||| |||||||||||    
26459408 gagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaa 26459455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 39631922 - 39631875
Alignment:
71 gagaatcgaatctgagacctcgaggaggagcatacttccaggtcccaa 118  Q
    |||||||||| ||||||||| |||||||||| |||| |||||||||||    
39631922 gagaatcgaacctgagaccttgaggaggagcttactcccaggtcccaa 39631875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 20952150 - 20952202
Alignment:
74 aatcgaatctgagacctcgaggaggagcatacttccaggtcccaaactaatac 126  Q
    ||||||||||||||  | ||||||||||| ||| ||||||||||||| |||||    
20952150 aatcgaatctgagattttgaggaggagcacactcccaggtcccaaaccaatac 20952202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 45709709 - 45709761
Alignment:
74 aatcgaatctgagacctcgaggaggagcatacttccaggtcccaaactaatac 126  Q
    ||||||| ||||||||||||||||||||| |||  ||| |||||| |||||||    
45709709 aatcgaacctgagacctcgaggaggagcacactctcagatcccaagctaatac 45709761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 145913 - 145965
Alignment:
73 gaatcgaatctgagacctcgaggaggagcatacttccaggtcccaaactaata 125  Q
    |||||||||||||||||||||| ||||||| ||| | ||||||||||| ||||    
145913 gaatcgaatctgagacctcgagaaggagcacactcctaggtcccaaaccaata 145965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 11606 - 11559
Alignment:
71 gagaatcgaatctgagacctcgaggaggagcatacttccaggtcccaa 118  Q
    |||||||||| ||||||||||||||||||||| ||| |||| ||||||    
11606 gagaatcgaacctgagacctcgaggaggagcacactcccagatcccaa 11559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 19960 - 20007
Alignment:
71 gagaatcgaatctgagacctcgaggaggagcatacttccaggtcccaa 118  Q
    |||||||||| ||||||||| ||||||||||||||| |||||| ||||    
19960 gagaatcgaacctgagaccttgaggaggagcatactcccaggttccaa 20007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 23378034 - 23377987
Alignment:
71 gagaatcgaatctgagacctcgaggaggagcatacttccaggtcccaa 118  Q
    |||||||||| ||||||||| ||||||||||| ||| |||||||||||    
23378034 gagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaa 23377987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 126
Target Start/End: Original strand, 30938217 - 30938272
Alignment:
71 gagaatcgaatctgagacctcgaggaggagcatacttccaggtcccaaactaatac 126  Q
    |||||||||| ||||||||||||||||||||| ||| | || |||||||| |||||    
30938217 gagaatcgaacctgagacctcgaggaggagcacactccaagatcccaaaccaatac 30938272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 37109349 - 37109396
Alignment:
71 gagaatcgaatctgagacctcgaggaggagcatacttccaggtcccaa 118  Q
    |||||||||| ||||||||| ||||||||||| ||| |||||||||||    
37109349 gagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaa 37109396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 39509148 - 39509101
Alignment:
71 gagaatcgaatctgagacctcgaggaggagcatacttccaggtcccaa 118  Q
    |||||||||| ||||||||||||||||||||| ||| |||| ||||||    
39509148 gagaatcgaacctgagacctcgaggaggagcacactcccagatcccaa 39509101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 126
Target Start/End: Complemental strand, 53496955 - 53496900
Alignment:
71 gagaatcgaatctgagacctcgaggaggagcatacttccaggtcccaaactaatac 126  Q
    ||||||| |||||||||| | ||||||||||| ||| ||||||||||||| |||||    
53496955 gagaatcaaatctgagactttgaggaggagcacactcccaggtcccaaaccaatac 53496900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 55427198 - 55427245
Alignment:
71 gagaatcgaatctgagacctcgaggaggagcatacttccaggtcccaa 118  Q
    |||||||||| ||||||||||||| ||||||| ||| |||||||||||    
55427198 gagaatcgaacctgagacctcgagcaggagcagactcccaggtcccaa 55427245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 31759657 - 31759703
Alignment:
72 agaatcgaatctgagacctcgaggaggagcatacttccaggtcccaa 118  Q
    ||||||||||||||||||| ||||||||||| ||| ||| |||||||    
31759657 agaatcgaatctgagaccttgaggaggagcacactcccaagtcccaa 31759703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 126
Target Start/End: Original strand, 41346962 - 41347016
Alignment:
72 agaatcgaatctgagacctcgaggaggagcatacttccaggtcccaaactaatac 126  Q
    ||||||||| ||||||| ||||||||||||||||| |||| || ||||| |||||    
41346962 agaatcgaacctgagacttcgaggaggagcatactcccagatctcaaaccaatac 41347016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 9780357 - 9780321
Alignment:
137 gttaatattacatgagatagacatatattaaccctat 173  Q
    |||||||||||||| |||| |||||||||||||||||    
9780357 gttaatattacatgggataaacatatattaaccctat 9780321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 118
Target Start/End: Complemental strand, 51954181 - 51954145
Alignment:
82 ctgagacctcgaggaggagcatacttccaggtcccaa 118  Q
    ||||||||||||||||||||||||| ||| |||||||    
51954181 ctgagacctcgaggaggagcatactcccaagtcccaa 51954145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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