View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14303_low_4 (Length: 456)
Name: NF14303_low_4
Description: NF14303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14303_low_4 |
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| [»] chr4 (13 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 436; Significance: 0; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Original strand, 27411861 - 27412316
Alignment:
| Q |
1 |
tgggatcacatggaattgttttcaaggattaggaagataaatggaagaaaatgcacataccctactttgaaaaataatgtccaacatataacccacttaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27411861 |
tgggatcacatggaattgttttcaaggattaggaagataaatggaagaaaatgcacataccctactttgaaaaataatgtccaacatataacccacttaa |
27411960 |
T |
|
| Q |
101 |
aatttgagacaatgcaatggtgaatggaacctgatgttttttcttgtattttgggtgggtatagctaatccaatggtagacatgctttagacatctcaca |
200 |
Q |
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| T |
27411961 |
aatttgagacaatgcaatggtgaatggaacctgatgttttttcttgcattttgggtgggtatagctaatccaatggtagacatgctttagacatctcaca |
27412060 |
T |
|
| Q |
201 |
tcttagatttatgtgcaacttgttaggcttgtgatggaacggtgtgaggagggaagaagcgaaccgatattgaacacaagaacttgagctactatgaacc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27412061 |
tcttagatttatgtgcaacttgttaggcttgtgatggaacggtgtgaggaggaaagaagcgaaccgatattgaacacaagaacttgagctactatgaacc |
27412160 |
T |
|
| Q |
301 |
aaattttatatttttgcaagaccaactccatgatatttgcataccaggacagaactttgaggtccttgcattcctaattaagtatcaaggtcaattaaac |
400 |
Q |
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||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27412161 |
aaattttttatttttgtaagaccaactccatgatatttgcataccaggacagaactttgaggtccttgcattcctaattaagtatcaaggtcaattaaac |
27412260 |
T |
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| Q |
401 |
tttctcttccatgaataggtctgttttatggtagggtagacctctaagacaatacc |
456 |
Q |
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| T |
27412261 |
tttctattccatgaataggtctgttttatggtagggtagacctctaagacaatacc |
27412316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 198 - 456
Target Start/End: Original strand, 27422605 - 27422863
Alignment:
| Q |
198 |
acatcttagatttatgtgcaacttgttaggcttgtgatggaacggtgtgaggagggaagaagcgaaccgatattgaacacaagaacttgagctactatga |
297 |
Q |
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|||||| |||||| |||||||||||||||||||||| |||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||||| |
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| T |
27422605 |
acatctcagatttgtgtgcaacttgttaggcttgtgttggaacagtgtgaggaggagagaagagaaccgatattgaacacaagaacatgagccactatga |
27422704 |
T |
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| Q |
298 |
accaaattttatatttttgcaagaccaactccatgatatttgcataccaggacagaactttgaggtccttgcattcctaattaagtatcaaggtcaatta |
397 |
Q |
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| T |
27422705 |
accacattttatatttttgcatgacagactccacaaaatttgcataccagaacaaaactttgcgatccctgccatcctaatcaaatatgaaggtcaatta |
27422804 |
T |
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| Q |
398 |
aactttctcttccatgaataggtctgttttatggtagggtagacctctaagacaatacc |
456 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
27422805 |
aactttctattccatgaataggtctgttttatggtagggtaggcctctaagacaatacc |
27422863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 309 - 456
Target Start/End: Complemental strand, 27570694 - 27570547
Alignment:
| Q |
309 |
tatttttgcaagaccaactccatgatatttgcataccaggacagaactttgaggtccttgcattcctaattaagtatcaaggtcaattaaactttctctt |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
27570694 |
tatttttgcaagaccaactccatgatatttgcataccaggacagaactttgaggtccttgcattcctaattaagtatcaaggtcaattaaactttctatt |
27570595 |
T |
|
| Q |
409 |
ccatgaataggtctgttttatggtagggtagacctctaagacaatacc |
456 |
Q |
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| T |
27570594 |
ccatgaataggtctgttttatggtagggtagacctctaagacaatacc |
27570547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 27419554 - 27419732
Alignment:
| Q |
19 |
ttttcaaggattaggaagataaatggaagaaaatgcacataccctactttgaaaaataatgtccaacatataaccc-acttaaaatttgagacaatgcaa |
117 |
Q |
| |
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|||||||||||||||||| | ||||||||| |||||||||||| || ||| | |||||| |||||| ||||||| |||| || ||||||||||||||| |
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| T |
27419554 |
ttttcaaggattaggaagcttaatggaagagcatgcacataccccacattgtgagataatggccaacaaataaccctacttgaagtttgagacaatgcaa |
27419653 |
T |
|
| Q |
118 |
tggtgaatggaacctgatgttttttcttgtattttgggtgggtatagctaatccaatggtagacatgctttagacatctcacat |
201 |
Q |
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| T |
27419654 |
tggtgaaagaaacctgatgttttttcttgcattt-----gggtatagataatccaattgtagacatgctttagacatctcacat |
27419732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 242 - 405
Target Start/End: Original strand, 27415014 - 27415176
Alignment:
| Q |
242 |
gtgtgaggagggaagaagcgaaccgatattgaacacaagaacttgagctactatgaaccaaattttatatttttgcaagaccaactccatgatatttgca |
341 |
Q |
| |
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||||||||||| || ||| ||||| || |||||||||||| | || || |||||||||| |||||||||| || |||||| | || ||||||||||||| |
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| T |
27415014 |
gtgtgaggaggaaa-aagagaaccaattttgaacacaagatcatgggcctctatgaaccacattttatattattacaagacaagcttcatgatatttgca |
27415112 |
T |
|
| Q |
342 |
taccaggacagaactttgaggtccttgcattcctaattaagtatcaaggtcaattaaactttct |
405 |
Q |
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| T |
27415113 |
taccaggacagaagtttgcggtccttgccttcttaattaagtatcaaggtcaattaaactttct |
27415176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 296 - 408
Target Start/End: Original strand, 27425311 - 27425423
Alignment:
| Q |
296 |
gaaccaaattttatatttttgcaagaccaactccatgatatttgcataccaggacagaactttgaggtccttgcattcctaattaagtatcaaggtcaat |
395 |
Q |
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|||||| | ||||||||||||| |||| |||||||||||||||||||||| | || |||||||| ||||| ||| || |||| |||||| |||||| ||| |
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| T |
27425311 |
gaaccacaatttatatttttgccagacaaactccatgatatttgcatacctgaacggaactttgcggtccctgccttgctaaataagtaacaaggttaat |
27425410 |
T |
|
| Q |
396 |
taaactttctctt |
408 |
Q |
| |
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||||||||||||| |
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| T |
27425411 |
taaactttctctt |
27425423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 254 - 437
Target Start/End: Complemental strand, 27566634 - 27566449
Alignment:
| Q |
254 |
aagaagcgaaccgatattgaacacaagaacttgagctactatgaaccaaattttatat--ttttgcaagaccaactccatgatatttgcataccaggaca |
351 |
Q |
| |
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|||||| ||||| |||| |||||||||| | | | ||||| ||||| ||||||||| |||| || ||| || ||||| | |||||||||||| ||| |
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| T |
27566634 |
aagaagagaaccaatatagaacacaagatcacaaaccactataaaccacattttatatagtttttcaggacaaattccattaaatttgcataccataaca |
27566535 |
T |
|
| Q |
352 |
gaactttgaggtccttgcattcctaattaagtatcaaggtcaattaaactttctcttccatgaataggtctgttttatggtagggt |
437 |
Q |
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|||||||| ||||| |||||| |||| |||||| || |||||||||||||||||||| ||| ||||| ||||||| |||| |||| |
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| T |
27566534 |
gaactttgcggtccctgcattgctaaataagtaacatggtcaattaaactttctcttgcattgataggcctgttttttggtggggt |
27566449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 329 - 405
Target Start/End: Original strand, 27419887 - 27419963
Alignment:
| Q |
329 |
catgatatttgcataccaggacagaactttgaggtccttgcattcctaattaagtatcaaggtcaattaaactttct |
405 |
Q |
| |
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|||||||||||| |||||| ||||||||| | ||||| ||| ||| ||||||||||||||||||||||||||||||| |
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| T |
27419887 |
catgatatttgcttaccagaacagaacttcgcggtccctgccttcttaattaagtatcaaggtcaattaaactttct |
27419963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 158 - 204
Target Start/End: Original strand, 27425105 - 27425151
Alignment:
| Q |
158 |
ggtatagctaatccaatggtagacatgctttagacatctcacatctt |
204 |
Q |
| |
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|||||||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
27425105 |
ggtatagctaatgcaatggtagacatggtttagacatctcacatctt |
27425151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 160 - 197
Target Start/End: Complemental strand, 27566791 - 27566754
Alignment:
| Q |
160 |
tatagctaatccaatggtagacatgctttagacatctc |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
27566791 |
tatagctaatccaatggtagacatgctttagacatctc |
27566754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 347
Target Start/End: Complemental strand, 27564085 - 27564031
Alignment:
| Q |
293 |
tatgaaccaaattttatatttttgcaagaccaactccatgatatttgcataccag |
347 |
Q |
| |
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||||||||| |||||||||||||||||||| ||| |||||| ||| ||| ||||| |
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| T |
27564085 |
tatgaaccacattttatatttttgcaagacaaaccccatgaaattcgcacaccag |
27564031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 27566913 - 27566861
Alignment:
| Q |
19 |
ttttcaaggattag--gaagataaatggaagaaaatgcacataccctactttg |
69 |
Q |
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|||||||| ||||| ||||||||||||||||| |||||||||||| |||||| |
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| T |
27566913 |
ttttcaagcattagatgaagataaatggaagaacatgcacataccccactttg |
27566861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 201
Target Start/End: Complemental strand, 27570922 - 27570881
Alignment:
| Q |
160 |
tatagctaatccaatggtagacatgctttagacatctcacat |
201 |
Q |
| |
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|||| |||||||||||||||||||||| | |||||||||||| |
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| T |
27570922 |
tataactaatccaatggtagacatgctctcgacatctcacat |
27570881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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