View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14303_low_8 (Length: 315)
Name: NF14303_low_8
Description: NF14303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14303_low_8 |
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| [»] chr6 (9 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 1903519 - 1903833
Alignment:
| Q |
1 |
atcatatctatagttgtagctttgttatcagttccaaatgcaagtgcttggaaaataggactgaatctctcactcgtctccgttgtttgttcggtaagat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
1903519 |
atcatatctatagttgtagctttgttatcagttccaaaagcaagtgcttggaaaataggattgaatctctcactcgtctccgttgtttgttctgtaagat |
1903618 |
T |
|
| Q |
101 |
agtcagcaaaactatatattttgacatcaaaattgatatcaaaatttaacgtcaacttaaatggttaacacgattcaaatatctgtgttcaaatataaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1903619 |
agtcagcaaaactatatattttgacatcaaaattgatatcaaaatttaacgtcaacttagatggttaacacgattcaaatatctgtgttcaaatataaat |
1903718 |
T |
|
| Q |
201 |
gatattcattaatcagaatttgagttccaatatacacttgaaaatcatggttaacgatattcaaatttgtggttaattgcgtcgagtggacgatgaatga |
300 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1903719 |
gatattcattaatcataatttgagttccaatatacacttgaaaatcatggttaacgatattcaaatttgtggttaattgcatcgagtggacgatgaatga |
1903818 |
T |
|
| Q |
301 |
gttgtgacacttgac |
315 |
Q |
| |
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||||||||||||||| |
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| T |
1903819 |
gttgtgacacttgac |
1903833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 1907752 - 1908066
Alignment:
| Q |
1 |
atcatatctatagttgtagctttgttatcagttccaaatgcaagtgcttggaaaataggactgaatctctcactcgtctccgttgtttgttcggtaagat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
1907752 |
atcatatctatagttgtagctttgttatcagttccaaaagcaagtgcttggaaaataggattgaatctctcactcgtctccgttgtttgttctgtaagat |
1907851 |
T |
|
| Q |
101 |
agtcagcaaaactatatattttgacatcaaaattgatatcaaaatttaacgtcaacttaaatggttaacacgattcaaatatctgtgttcaaatataaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1907852 |
agtcagcaaaactatatattttgacatcaaaattgatatcaaaatttaacgtcaacttagatggttaacacgattcaaatatctgtgttcaaatataaat |
1907951 |
T |
|
| Q |
201 |
gatattcattaatcagaatttgagttccaatatacacttgaaaatcatggttaacgatattcaaatttgtggttaattgcgtcgagtggacgatgaatga |
300 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1907952 |
gatattcattaatcataatttgagttccaatatacacttgaaaatcatggttaacgatattcaaatttgtggttaattgcatcgagtggacgatgaatga |
1908051 |
T |
|
| Q |
301 |
gttgtgacacttgac |
315 |
Q |
| |
|
||||||||||||||| |
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| T |
1908052 |
gttgtgacacttgac |
1908066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 1898219 - 1898331
Alignment:
| Q |
1 |
atcatatctatagttgtagctttgttatcagttccaaatgcaagtgcttggaaaataggactgaatctctcactcgtctccgttgtttgttcggtaagat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||| ||||||| |
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| T |
1898219 |
atcatatctatagttgtagctttgttatcagttccaaatgcaagtgcttggaaaataggactgaatctctcacttatctccattgtttcttctgtaagat |
1898318 |
T |
|
| Q |
101 |
agtcagcaaaacta |
114 |
Q |
| |
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| || ||||||||| |
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| T |
1898319 |
actc-gcaaaacta |
1898331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 1892890 - 1892990
Alignment:
| Q |
1 |
atcatatctatagttgtagctttgttatcagttccaaatgcaagtgcttggaaaataggactgaatctctcactcgtctccgttgtttgttcggtaagat |
100 |
Q |
| |
|
|||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||| ||| ||||||| |
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| T |
1892890 |
atcatatcaacagttgtagcattgttatcagttccaaatgcaagtgcttggaaaataggactaaatctctcactcatctccattgtttcttctgtaagat |
1892989 |
T |
|
| Q |
101 |
a |
101 |
Q |
| |
|
| |
|
|
| T |
1892990 |
a |
1892990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 1888053 - 1888142
Alignment:
| Q |
12 |
agttgtagctttgttatcagttccaaatgcaagtgcttggaaaataggactgaatctctcactcgtctccgttgtttgttcggtaagata |
101 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||| ||| |||||||| |
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| T |
1888053 |
agttgtagcattgttatcagttccaaatgcaagtgcttggaaaataggactaaatctctcactcatctccattgtttcttccgtaagata |
1888142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 1913594 - 1913707
Alignment:
| Q |
1 |
atcatatctatagttgtagctttgttatcagttccaaatgcaagtgcttggaaaataggactgaatctctcactcgtctccgttgtttgttcggtaagat |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||| ||||| |||||| ||| ||||||| |
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| T |
1913594 |
atcatatctacagttgtagctttgttatcagttccaaattcaagtgcttggataataggactaaatctctcacttatctccattgtttcttctgtaagat |
1913693 |
T |
|
| Q |
101 |
agtcagcaaaacta |
114 |
Q |
| |
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| | ||||||||| |
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| T |
1913694 |
acactgcaaaacta |
1913707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 1880746 - 1880846
Alignment:
| Q |
1 |
atcatatctatagttgtagctttgttatcagttccaaatgcaagtgcttggaaaataggactgaatctctcactcgtctccgttgtttgttcggtaagat |
100 |
Q |
| |
|
|||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| | |||| ||| ||||||| |
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| T |
1880746 |
atcatatcaacagttgtagcattgttatcagttccaaatgcaagtgcttggaaaataggactaaatctctcactcatctctatagtttcttctgtaagat |
1880845 |
T |
|
| Q |
101 |
a |
101 |
Q |
| |
|
| |
|
|
| T |
1880846 |
a |
1880846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 235
Target Start/End: Original strand, 1898490 - 1898541
Alignment:
| Q |
184 |
tgtgttcaaatataaatgatattcattaatcagaatttgagttccaatatac |
235 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| | ||| ||||||||||||| |
|
|
| T |
1898490 |
tgtgttcaaatataaatggtattcattaatcatagtttaagttccaatatac |
1898541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 290
Target Start/End: Original strand, 1913939 - 1914039
Alignment:
| Q |
192 |
aatataaatgatattcattaatcaga--atttgagttccaatatacacttgaaaatcatggttaacgatattcaaatttgtggttaattgcgtcgagtgg |
289 |
Q |
| |
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|||||| |||||||||||||| || | |||||||||| ||||||| ||| |||| |||| ||||||||||||| |||||||||| || || |||||| |
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| T |
1913939 |
aatatatatgatattcattaaccacacaatttgagttcaaatatacgcttagaaattgtggtcaacgatattcaaaattgtggttaactgtgttgagtgg |
1914038 |
T |
|
| Q |
290 |
a |
290 |
Q |
| |
|
| |
|
|
| T |
1914039 |
a |
1914039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 188 - 279
Target Start/End: Complemental strand, 17773430 - 17773339
Alignment:
| Q |
188 |
ttcaaatataaatgatattcattaatcagaatttgagttccaatatacacttgaaaatcatggttaacgatattcaaatttgtggttaattg |
279 |
Q |
| |
|
|||||||||| ||||||| |||||||| ||| || |||| ||||||||||||||||| ||||||||||| |||||| |||||||| |||| |
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| T |
17773430 |
ttcaaatatacatgatatctattaatcacaatctgcgttcaaatatacacttgaaaattgtggttaacgatgttcaaaattgtggttgattg |
17773339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 265
Target Start/End: Original strand, 42467748 - 42467829
Alignment:
| Q |
184 |
tgtgttcaaatataaatgatattcattaatcagaatttgagttccaatatacacttgaaaatcatggttaacgatattcaaa |
265 |
Q |
| |
|
|||||||||||||| ||||||| |||| || |||||| |||| |||||| || |||||||||||||||| || ||||||| |
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| T |
42467748 |
tgtgttcaaatatacatgatatcttttaaccacaatttgtgttcaaatataaacatgaaaatcatggttaatgacattcaaa |
42467829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 21143835 - 21143758
Alignment:
| Q |
235 |
cacttgaaaatcatggttaacgatattcaaatttgtggttaattgcgtcgagtggacgatgaatgagttgtgacactt |
312 |
Q |
| |
|
||||||| |||||||||||| || |||||| |||||||||||| ||| |||||| ||| ||||||||||||||||| |
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|
| T |
21143835 |
cacttgacaatcatggttaatgaagttcaaaattgtggttaattacgttcagtggatgattaatgagttgtgacactt |
21143758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 246
Target Start/End: Complemental strand, 51541592 - 51541532
Alignment:
| Q |
186 |
tgttcaaatataaatgatattcattaatcagaatttgagttccaatatacacttgaaaatc |
246 |
Q |
| |
|
|||||||||||| |||||||||||| | | |||||||||| |||||||||||||||||| |
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|
| T |
51541592 |
tgttcaaatatacatgatattcatttactacaatttgagtttaaatatacacttgaaaatc |
51541532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 11792224 - 11792278
Alignment:
| Q |
185 |
gtgttcaaatataaatgatattcattaatcagaatttgagttccaatatacactt |
239 |
Q |
| |
|
||||||||||||| |||||||||||| |||| |||||| |||| ||||||||||| |
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|
| T |
11792224 |
gtgttcaaatatacatgatattcattgatcacaatttgtgttcaaatatacactt |
11792278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 265
Target Start/End: Original strand, 26866664 - 26866744
Alignment:
| Q |
185 |
gtgttcaaatataaatgatattcattaatcagaatttgagttccaatatacacttgaaaatcatggttaacgatattcaaa |
265 |
Q |
| |
|
||||||||||||| |||||||||||||| || |||||| |||| |||| ||| ||||| |||||||| ||| |||||| |
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|
| T |
26866664 |
gtgttcaaatatacatgatattcattaaccacaatttgtgttcatgtataaactgaaaaattatggttaatgatgttcaaa |
26866744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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