View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14304_high_14 (Length: 361)
Name: NF14304_high_14
Description: NF14304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14304_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 14 - 355
Target Start/End: Complemental strand, 26613059 - 26612718
Alignment:
| Q |
14 |
taatcttcttctacccctcaaatcctctttgttgctttgcaataaaagcctctacagtacgacgaaactcctcgttgctcatctcatcctccggatatga |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26613059 |
taatcttcttctacccctcaaatcctctttgttgctttgcaataaaagcctctacagtacgacgaaactcctcgttgctcatctcatcctccggatatga |
26612960 |
T |
|
| Q |
114 |
aattctcaccattttctcctcactagcagcaggagcagcttcaatctttttccttccgctgttctcactctcacatctttgcagcacacgacgccgtttc |
213 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
26612959 |
aattctcaccattttctcctcactagcagcaggagcagcttcaatctttttccttccgctgttctcactctcacatctttgcagcacgcgacgccgtttc |
26612860 |
T |
|
| Q |
214 |
ttcaaaatctcagtttcacaccttctataacaataacccttcttcaactctgttttagttttcattttctcttccacatcatcaattctcttgttctcta |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26612859 |
ttcaaaatctcagtttcacaccttctataacaataacccttcttcaactctgttttagttttcattttctcttccacatcatcaattctcttgttctcta |
26612760 |
T |
|
| Q |
314 |
tgctagccccttcttttgtgctatcatattttattattctct |
355 |
Q |
| |
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||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
26612759 |
tgctagcaccttcttttgtgctatcatattttatcattctct |
26612718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 20 - 244
Target Start/End: Complemental strand, 26605500 - 26605282
Alignment:
| Q |
20 |
tcttctacccctcaaatcctctttgttgctttgcaataaaagcctctacagtacgacgaaactcctcgttgctcatctcatcctccggatatgaaattct |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||| ||||||||||| |||||||||||||| ||||| || |
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| T |
26605500 |
tcttctacccctcaaatcctctttgttgctttgcaataaaagcttctacaatgcgacgaaactcatcgttgctcatttcatcctccggatacgaaatcct |
26605401 |
T |
|
| Q |
120 |
caccattttctcctcactagcagcaggagcagcttcaatctttttccttccgctgttctcactctcacatctttgcagcacacgacgccgtttcttcaaa |
219 |
Q |
| |
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|| ||||| |||||| ||||| || |||||||||||| |||||||| | |||||||||||||| |||| || |||||||| |||||||||||| |
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| T |
26605400 |
caacatttcctcctc---agcaggagtagcagcttcaatgattttcctttc---attctcactctcacacctttccaatacacgacgtcgtttcttcaaa |
26605307 |
T |
|
| Q |
220 |
atctcagtttcacaccttctataac |
244 |
Q |
| |
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|| | ||| |||||||||||||||| |
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| T |
26605306 |
atattagtctcacaccttctataac |
26605282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 14 - 244
Target Start/End: Complemental strand, 26597706 - 26597479
Alignment:
| Q |
14 |
taatcttcttctacccctcaaatcctctttgttgctttgcaataaaagcctctacagtacgacgaaactcctcgttgctcatctcatcctccggatatga |
113 |
Q |
| |
|
|||||||||||||||| || |||||||| ||| ||| |||||||||||||||||||||||| | ||||||||||||||||||| |||||| ||||| | |
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|
| T |
26597706 |
taatcttcttctacccttcgaatcctct--gtt-cttggcaataaaagcctctacagtacgatggaactcctcgttgctcatcttatcctcgggatacaa |
26597610 |
T |
|
| Q |
114 |
aattctcaccattttctcctcactagcagcaggagcagcttcaatctttttccttccgctgttctcactctcacatctttgcagcacacgacgccgtttc |
213 |
Q |
| |
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||| ||||| || | ||||| || || || |||||| |||||| ||||||||||| |||||||||||||||| ||||||| ||||||| | |||| |
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| T |
26597609 |
aatcctcacaatcgtttcctccttaacaacatgagcaggttcaatgtttttccttccattgttctcactctcacacctttgcaacacacgatgttgtttt |
26597510 |
T |
|
| Q |
214 |
ttcaaaatctcagtttcacaccttctataac |
244 |
Q |
| |
|
|| ||| | ||| | |||||||||||||||| |
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|
| T |
26597509 |
tttaaattttcactctcacaccttctataac |
26597479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 267 - 355
Target Start/End: Complemental strand, 32016351 - 32016263
Alignment:
| Q |
267 |
tttagttttcattttctcttccacatcatcaattctcttgttctctatgctagccccttcttttgtgctatcatattttattattctct |
355 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||||| ||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
32016351 |
tttagttttcattttctcttccacgtcatcaattctattgttctctttgctagcaccttcatttgtgctatcatattttattattctct |
32016263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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