View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14304_high_16 (Length: 309)
Name: NF14304_high_16
Description: NF14304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14304_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 3 - 293
Target Start/End: Original strand, 46427705 - 46427995
Alignment:
| Q |
3 |
cacagagcgccaatgggtaactcaaatcatctcattttttatagtggttaatatgcacttcatccatatgcacataagttggttatactttttatattga |
102 |
Q |
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| T |
46427705 |
cacagagcgcaaatggataactcaaatcatctcattttttatagtggttaatatgcacttcatccatatgcacataagttggttatactttttatattga |
46427804 |
T |
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| Q |
103 |
tttagcctattatttctttccctattattatatcctataccggtcttctattctgtttgttgctactgttgtgctgtgccttgtcttttaagcctttcct |
202 |
Q |
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| T |
46427805 |
tttagcctattatttctttccctattattatatcctataccggtcttctattctgtttgttgctactgttgtgctgtgccttgtcttttaagcctttcct |
46427904 |
T |
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| Q |
203 |
tttttaactttcaaccatgttaaaattacatcaatctttcatttttatttgatcaaaacattaaacagaattggctaaagagcattgttta |
293 |
Q |
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| T |
46427905 |
tttttaactttcaaccatgttaaaattacatcaatctttcatttttatttgatcaaaacattaaacagaatttgctaaagagcattgttta |
46427995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 114 - 293
Target Start/End: Original strand, 46015514 - 46015684
Alignment:
| Q |
114 |
atttctttccctattattatatcctataccggtcttctattctgtttgttgctactgttgtgctgtgccttgtcttttaagcctttccttttttaacttt |
213 |
Q |
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| T |
46015514 |
atttcattctctattattatatccaatgccgttcttctattctgttagttgctattgttgt--tgtgccttgt------------tccttttttaacttt |
46015599 |
T |
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| Q |
214 |
caa----ccatgttaaaattacatcaatctttcatttt-tatttgatcaaaacattaaacagaattggctaaagagcattgttta |
293 |
Q |
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| T |
46015600 |
caatcaaccatattaaaataacctcaccctttcattttttatttgatcaaaacattaaacagaatttgctaaggagcattgttta |
46015684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 293
Target Start/End: Original strand, 46027585 - 46027633
Alignment:
| Q |
245 |
ttttatttgatcaaaacattaaacagaattggctaaagagcattgttta |
293 |
Q |
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| T |
46027585 |
ttttatttgatcaaaacattaaacagaatttgctgaggagcgttgttta |
46027633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 46015318 - 46015372
Alignment:
| Q |
14 |
aatgggtaactcaaatcatctcattttttatagtggttaatatgcacttcatccat |
69 |
Q |
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| T |
46015318 |
aatgggtaactcaaataatct-attttatatattggttaacatgcacttcatccat |
46015372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 287
Target Start/End: Complemental strand, 3802015 - 3801975
Alignment:
| Q |
247 |
ttatttgatcaaaacattaaacagaattggctaaagagcat |
287 |
Q |
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| T |
3802015 |
ttatttgatcaaaacattaatcagaatttgctaaagagcat |
3801975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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