View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14304_high_18 (Length: 274)

Name: NF14304_high_18
Description: NF14304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14304_high_18
NF14304_high_18
[»] chr1 (4 HSPs)
chr1 (72-265)||(42106320-42106516)
chr1 (90-152)||(18527043-18527105)
chr1 (90-147)||(42105657-42105713)
chr1 (18-47)||(42106266-42106295)
[»] chr6 (1 HSPs)
chr6 (90-147)||(4175862-4175919)
[»] chr2 (1 HSPs)
chr2 (90-149)||(35413577-35413636)
[»] chr8 (1 HSPs)
chr8 (90-148)||(16939116-16939174)
[»] chr4 (1 HSPs)
chr4 (90-148)||(28910961-28911019)


Alignment Details
Target: chr1 (Bit Score: 171; Significance: 7e-92; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 72 - 265
Target Start/End: Original strand, 42106320 - 42106516
Alignment:
Q  72 atcacttaagatgaggagtttaattggtggacagtgtaaacttgttttgcactgtctgtctattccaattaatctcataaactaata---ttcgtatctt 168  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||| ||||||    
T  42106320 atcacttaagatgaggtgtttaattggtggacagtgtaaacttgttttgcactgtctgtctattccaattaatctcataaactaataatattcctatctt 42106419  T
Q  169 aatcttattttgatattattaaaattgttaattataatattttagtaaaataaaaatcccctgcttatttaatttgatagcaaatttgtagtattat 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  42106420 aatcttattttgatattattaaaattgttaattataatattttagtaaaataaaaatcccctgcttatttaatttgatagcaaatttgtaatattat 42106516  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 152
Target Start/End: Complemental strand, 18527105 - 18527043
Alignment:
Q  90 tttaattggtggacagtgtaaacttgttttgcactgtctgtctattccaattaatctcataaa 152  Q
    |||||||||| || |||||||| |||||| |||||||  |||||||| |||||||||||||||    
T  18527105 tttaattggttgatagtgtaaagttgtttcgcactgttagtctattctaattaatctcataaa 18527043  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 147
Target Start/End: Complemental strand, 42105713 - 42105657
Alignment:
Q  90 tttaattggtggacagtgtaaacttgttttgcactgtctgtctattccaattaatctc 147  Q
    |||||||||| ||||||||||||||||||| || |||| ||||| |||||||||||||    
T  42105713 tttaattggttgacagtgtaaacttgttttacattgtcagtcta-tccaattaatctc 42105657  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 42106266 - 42106295
Alignment:
Q  18 aaacgtaggttgaatgcatttattataaag 47  Q
    ||||||||||||||||||||||||||||||    
T  42106266 aaacgtaggttgaatgcatttattataaag 42106295  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 147
Target Start/End: Original strand, 4175862 - 4175919
Alignment:
Q  90 tttaattggtggacagtgtaaacttgttttgcactgtctgtctattccaattaatctc 147  Q
    |||||||||  ||||||||||| ||||||| ||||||| |||||||| ||||||||||    
T  4175862 tttaattggctgacagtgtaaagttgttttacactgtcagtctattcaaattaatctc 4175919  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 149
Target Start/End: Complemental strand, 35413636 - 35413577
Alignment:
Q  90 tttaattggtggacagtgtaaacttgttttgcactgtctgtctattccaattaatctcat 149  Q
    |||||||||| || |||||||| ||||||| ||||||  |||||||| ||||||||||||    
T  35413636 tttaattggttgatagtgtaaagttgttttacactgttagtctattctaattaatctcat 35413577  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 148
Target Start/End: Original strand, 16939116 - 16939174
Alignment:
Q  90 tttaattggtggacagtgtaaacttgttttgcactgtctgtctattccaattaatctca 148  Q
    |||||||||| ||||||||||| ||||||| |||| ||  ||||||| |||||||||||    
T  16939116 tttaattggttgacagtgtaaaattgttttacactatcgatctattctaattaatctca 16939174  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 148
Target Start/End: Original strand, 28910961 - 28911019
Alignment:
Q  90 tttaattggtggacagtgtaaacttgttttgcactgtctgtctattccaattaatctca 148  Q
    |||||| ||| || |||||||| ||||||| ||||||| |||||||| |||||||||||    
T  28910961 tttaatcggttgatagtgtaaatttgttttacactgtcagtctattctaattaatctca 28911019  T

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