View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14304_high_25 (Length: 254)

Name: NF14304_high_25
Description: NF14304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14304_high_25
NF14304_high_25
[»] chr1 (2 HSPs)
chr1 (18-254)||(15594237-15594473)
chr1 (83-185)||(4679353-4679455)
[»] chr7 (8 HSPs)
chr7 (84-175)||(8586518-8586609)
chr7 (18-175)||(8615914-8616071)
chr7 (80-211)||(8666680-8666811)
chr7 (84-185)||(17259498-17259599)
chr7 (80-211)||(10495147-10495278)
chr7 (80-185)||(3146528-3146633)
chr7 (82-177)||(6788775-6788870)
chr7 (84-185)||(17267201-17267302)
[»] chr2 (3 HSPs)
chr2 (80-174)||(16658333-16658427)
chr2 (84-185)||(16662797-16662898)
chr2 (80-129)||(12246267-12246316)
[»] chr4 (2 HSPs)
chr4 (84-169)||(30774517-30774602)
chr4 (123-177)||(35131763-35131817)


Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 15594237 - 15594473
Alignment:
Q  18 aatttctcatcttcagcacgatattcctcggcttcttgaatcannnnnnnaatttcatatgctgacaacctttctttgtcattggttattgtgatctcgt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15594237 aatttctcatcttcagcacgatattcctcggcttcttgaatcatttttttaatttcatatgctgacaacctttctttgtcattggttattgtgatctcgt 15594336  T
Q  118 ttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgatagcaaagcatctttcaaaggtctggccacggggacccgaagt 217  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  15594337 ttgtattgccagtggatgtttccttcacagaaacagtcaggatagcattttcatcgatagcaaagcatccttcaaaggtctggccacggggacccgaagt 15594436  T
Q  218 gcaagaaagagtcaacataccaagaaaattattgtca 254  Q
    |||||||||||||||||||||||| ||||||||||||    
T  15594437 gcaagaaagagtcaacataccaagcaaattattgtca 15594473  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 185
Target Start/End: Complemental strand, 4679455 - 4679353
Alignment:
Q  83 caacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgatagcaaag 182  Q
    |||||||||||| ||||||||||| ||||||| ||| ||||| || || ||  |||| ||  |||||||||| | | | |||||| |||| |||||||||    
T  4679455 caacctttctttttcattggttatggtgatcttgttcgtatttcctgtagacatttctttagcagaaacagttagggtgccatttgcatctatagcaaag 4679356  T
Q  183 cat 185  Q
    |||    
T  4679355 cat 4679353  T

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Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 84 - 175
Target Start/End: Complemental strand, 8586609 - 8586518
Alignment:
Q  84 aacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgat 175  Q
    ||||||||||||||||||||||| || || |||||||||||||||| |||| |||||||| |||||||||| | ||||||||||||||||||    
T  8586609 aacctttctttgtcattggttatcgttatttcgtttgtattgccagaggatatttccttcgcagaaacagttaggataccattttcatcgat 8586518  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 8615914 - 8616071
Alignment:
Q  18 aatttctcatcttcagcacgatattcctcggcttcttgaatcannnnnnnaatttcatatgctgacaacctttctttgtcattggttattgtgatctcgt 117  Q
    ||||| ||||||||||| || || ||||| |||||||||||||       ||||||||  || || ||||||||||||||||||||||| || || || |    
T  8615914 aatttttcatcttcagcgcggtactcctctgcttcttgaatcagttttttaatttcatcagccgataacctttctttgtcattggttatcgttatttcat 8616013  T
Q  118 ttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgat 175  Q
    ||||||||||||| ||| |||||||| |||| ||||| | ||||||||| || |||||    
T  8616014 ttgtattgccagtagatttttccttcgcagatacagtaaggataccattatcgtcgat 8616071  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 80 - 211
Target Start/End: Original strand, 8666680 - 8666811
Alignment:
Q  80 tgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgatagca 179  Q
    ||||||||||||||||||||||||||| ||||||  |||  ||||||| |||||| ||||| |  ||| |||||||| ||||||||||||||| || | |    
T  8666680 tgacaacctttctttgtcattggttatggtgatcatgttcatattgcctgtggatatttccctagcagtaacagtcaggataccattttcatcaattgaa 8666779  T
Q  180 aagcatctttcaaaggtctggccacggggacc 211  Q
    ||||||   || |||| |||||||||||||||    
T  8666780 aagcatacctccaagggctggccacggggacc 8666811  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 185
Target Start/End: Original strand, 17259498 - 17259599
Alignment:
Q  84 aacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgatagcaaagc 183  Q
    |||||| ||||||||||||||||||| ||||| ||  || ||||||||||| | ||| |  ||||||| ||||  |||||||||| ||||||| ||||||    
T  17259498 aaccttcctttgtcattggttattgtaatctcattcttactgccagtggatttgtccatagcagaaactgtcaaaataccattttgatcgatatcaaagc 17259597  T
Q  184 at 185  Q
    ||    
T  17259598 at 17259599  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 211
Target Start/End: Complemental strand, 10495278 - 10495147
Alignment:
Q  80 tgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgatagca 179  Q
    ||||||||||||||||||||| || || |||||| ||||  ||||||| || ||| | |||||  ||| |||||||| ||| ||||||||||| || | |    
T  10495278 tgacaacctttctttgtcattagtaatggtgatcgcgttcatattgcctgtagatatatccttagcagtaacagtcaggatgccattttcatcaatggaa 10495179  T
Q  180 aagcatctttcaaaggtctggccacggggacc 211  Q
    ||||||   || |||| ||||||||| |||||    
T  10495178 aagcatacctccaagggctggccacgaggacc 10495147  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 185
Target Start/End: Original strand, 3146528 - 3146633
Alignment:
Q  80 tgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgatagca 179  Q
    |||||| |||||||||||||| |||| ||| ||||| || ||| | ||||||||| |||| ||  |||||||| | | ||| |||||||||| ||||| |    
T  3146528 tgacaatctttctttgtcattagttactgtaatctcattcgtactaccagtggatttttcattagcagaaacaattaagatgccattttcattgatagta 3146627  T
Q  180 aagcat 185  Q
    ||||||    
T  3146628 aagcat 3146633  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 177
Target Start/End: Original strand, 6788775 - 6788870
Alignment:
Q  82 acaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgatag 177  Q
    ||||||||||||||| ||||||||| || ||||| ||  ||||||| |||||| ||||  |  ||||||| ||||  |||||||||||||| ||||    
T  6788775 acaacctttctttgtaattggttatggtaatctcattcatattgcccgtggatttttcagtagcagaaacggtcaaaataccattttcatcaatag 6788870  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 185
Target Start/End: Original strand, 17267201 - 17267302
Alignment:
Q  84 aacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgatagcaaagc 183  Q
    |||||| ||||||||||||||||||| ||||| ||  || | ||||||||| | ||| |  ||||||| ||||  |||||||||| ||||| | ||||||    
T  17267201 aaccttcctttgtcattggttattgtaatctcattcttactaccagtggatttgtccatagcagaaactgtcaaaataccattttgatcgacatcaaagc 17267300  T
Q  184 at 185  Q
    ||    
T  17267301 at 17267302  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 174
Target Start/End: Complemental strand, 16658427 - 16658333
Alignment:
Q  80 tgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcga 174  Q
    |||||| |||||||| ||||||||||| ||||||| ||||||||| || || |||  ||||||  |||||||||| | |||||||||||||||||    
T  16658427 tgacaatctttctttttcattggttatggtgatcttgtttgtatttcctgtagatacttccttagcagaaacagttaggataccattttcatcga 16658333  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 185
Target Start/End: Complemental strand, 16662898 - 16662797
Alignment:
Q  84 aacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgatagcaaagc 183  Q
    ||||||||||||||||||||||| |||||||| ||  || | || |||||| ||||||   | |||||||| | ||| || |||||||||||||||||||    
T  16662898 aacctttctttgtcattggttatcgtgatctcattcttacttccggtggatctttcctctgctgaaacagttaagatgccgttttcatcgatagcaaagc 16662799  T
Q  184 at 185  Q
    ||    
T  16662798 at 16662797  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 129
Target Start/End: Complemental strand, 12246316 - 12246267
Alignment:
Q  80 tgacaacctttctttgtcattggttattgtgatctcgtttgtattgccag 129  Q
    ||||||||||||||||| ||| |||||||| ||||| |||| ||||||||    
T  12246316 tgacaacctttctttgtaattagttattgtaatctcatttgaattgccag 12246267  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 169
Target Start/End: Original strand, 30774517 - 30774602
Alignment:
Q  84 aacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttc 169  Q
    |||||||||||||| |||||||| |||||||| ||  |||||||||||||| ||||| |  |||||||| |||  |||||||||||    
T  30774517 aacctttctttgtcgttggttatcgtgatctcattcatattgccagtggatttttccatagcagaaacattcagtataccattttc 30774602  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 177
Target Start/End: Original strand, 35131763 - 35131817
Alignment:
Q  123 ttgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgatag 177  Q
    ||||| |||||| |||||||  ||||||||||||  |||||||||||||||||||    
T  35131763 ttgccggtggatttttccttagcagaaacagtcaaaataccattttcatcgatag 35131817  T

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