View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14304_high_3 (Length: 530)
Name: NF14304_high_3
Description: NF14304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14304_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 19 - 519
Target Start/End: Complemental strand, 2566092 - 2565579
Alignment:
| Q |
19 |
ataggaaagctacaaaattgtttgcgcaaagtagcaaaaattaacggtttcatttgtttgtgtaaacaaacttaaaacgatagtgttgggtgctctctat |
118 |
Q |
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|||| ||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
2566092 |
atagaaaagctatgaaattgtttgcgaaaagtagcaaaaattaacggtttcatttgtgtgtgtaaacaaacttaaaacgatagtgttgggtgctct--at |
2565995 |
T |
|
| Q |
119 |
caaaccgtacccatcaagttatctatcatataattcatacgccacggtgtccatgaggtcatctaacatataatgcatacaccacaaaacctaatagtgt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2565994 |
caaaccgtacccatcaagttatctatcatataattcatacaccacggtgtccatgaggtcatctaacatataatgcatccaccacaaaacctaatagtgt |
2565895 |
T |
|
| Q |
219 |
tgggtacgagaagtgtattagaaaaaacttaaatatcaccttgaaaaggata---------------ttattgaaaaatatcagtcatcttaaaagtgtt |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
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| T |
2565894 |
tgggtacgagaagtgtattagaaaaaacttaaatatcaccttgaaaaggatagcgcattaaaagagtttattgaaaaatatcagtcatcttaaaagtgat |
2565795 |
T |
|
| Q |
304 |
ttttaggtaagtcattaaagtctctttgtagcttttacgagtgaataattgaactctccctttacattaccagaaagatccttatttccatgttcttttt |
403 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||| |
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| T |
2565794 |
ttttaggtaagtcattagagtctctttgtagcttttacgagtgaataattgaactctccctttacattgccagaaagatccttatttcctttttcttttt |
2565695 |
T |
|
| Q |
404 |
ggttgtggagtatcatgttggtatgattgtggttctttatctttttcttgcctaattagtttatgacttatgttaaccctctattatgggttgttggact |
503 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2565694 |
ggttgtggagtatcatgttggtatgattgtggttctttatctttttcttgcctaattagtttatgacttatgttaaccctctattatgggttgttggact |
2565595 |
T |
|
| Q |
504 |
tttgttgtgatccttt |
519 |
Q |
| |
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|||||||||||||||| |
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| T |
2565594 |
tttgttgtgatccttt |
2565579 |
T |
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