View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14304_high_4 (Length: 487)
Name: NF14304_high_4
Description: NF14304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14304_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 94 - 468
Target Start/End: Complemental strand, 23408093 - 23407719
Alignment:
| Q |
94 |
tattattttgtaatttgactgagaattagaatttgataagcttatatcctttgtctgtaagcacaaacacatctgatacaaaatatatacatgaaagttc |
193 |
Q |
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| T |
23408093 |
tattattttgtaatttgactgagaattagaatttgataagcttatatcctttgtctttaagcacaaacacatctgatacaaaatatatacatgaaagttc |
23407994 |
T |
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| Q |
194 |
agaggtgagcttagaaggaaagatacatggtgtgtgtttgattctatatccagctaatgctaatatatgaacacattgttcaaactagtaaatttgttct |
293 |
Q |
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| T |
23407993 |
agaggtgagcttagaaagaaagatacatggtgtgtgtttgattctatatccagctaatgctaatatatgaacacattgttcaaactagtaaatttgttct |
23407894 |
T |
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| Q |
294 |
tggaattggttcttctctgccccaaacccatgctggccacgaggcagggtggtgttgctcgttttcaacgagtttcctcgctgccatttgcactagtgag |
393 |
Q |
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| T |
23407893 |
tggtattggttcttctctgccccaaacccatgctggccacgaggcagggtggtgttgctcgttttcaaggagattcctcgctgccatttgcactagggag |
23407794 |
T |
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| Q |
394 |
ccatgttaagcatttgatgaccaaagcatgacaatgaataagcattttatgtaatggttcctaaaattgataatg |
468 |
Q |
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| T |
23407793 |
ccatgttaagcatttgatgacctaagcatgacaatgaataagcattttctgtaatggttcctaaaattgataatg |
23407719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 23408260 - 23408192
Alignment:
| Q |
16 |
caaaattaaggatgttttttgctgtaattctgcagaagatatctgctatatgtttaattataagtggac |
84 |
Q |
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| T |
23408260 |
caaaattaaggatgttttttgctgtaattgtgcagaagatatctgctatatgtttaattataagtggac |
23408192 |
T |
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