View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14304_high_5 (Length: 485)
Name: NF14304_high_5
Description: NF14304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14304_high_5 |
 | |
|
| [»] scaffold0770 (1 HSPs) |
| | |
|
| [»] scaffold0029 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 5 - 349
Target Start/End: Original strand, 50565933 - 50566278
Alignment:
| Q |
5 |
cacaataagatcacataagtttctaaaaattcttcttatacaatactcttacataccctctcaaattgaaatttcatacactcatatgtattaaggagtt |
104 |
Q |
| |
|
||||||||||| |||||| ||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||| ||| ||||| |
|
|
| T |
50565933 |
cacaataagataacataattttttaagaattcttcttctacaatactcttacataccctctcaaattgaaatttcatatactc--atgtactaaagagtt |
50566030 |
T |
|
| Q |
105 |
gttcataagacatatttataatcaatttatgcagcagttattagtcggtgtgaacttgaaaggctaagaata-atttaaaaggttgaactcaaaataaac |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
50566031 |
gttcataagacatatttataatcaatttatgcggtagtcattagtttgtgtgaacttgaaaggctaagaatacatttaaaaggttgaactcaaaataaac |
50566130 |
T |
|
| Q |
204 |
ccataataaaacatttaaagagggtgcatcattccccctttctttacattaaaagttgggcacattcaagcctagaagaagaccgcacatctaatattta |
303 |
Q |
| |
|
||| ||||||||| |||||||||||||||| || | |||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||| |
|
|
| T |
50566131 |
ccacaataaaaca-ttaaagagggtgcatcctttcacctttctttacattaaaagttgggcacatttaagtctagaagaagaatgcacatctaatattta |
50566229 |
T |
|
| Q |
304 |
aac---ttataattaacatattaaactactttatattgttgacaatgat |
349 |
Q |
| |
|
||| ||||||||||| ||||||||| |||||||||| |||||||| |
|
|
| T |
50566230 |
aaccttatataattaacacattaaactaatttatattgtacacaatgat |
50566278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 50513752 - 50514040
Alignment:
| Q |
1 |
aagacacaataagatcacataagtttctaaaaattcttcttatacaatactcttacataccctctcaaattgaaatttcatacactcatatgtattaagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||| | |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| | |
|
|
| T |
50513752 |
aagacacaataagatcacataagtttttaagagttcttcttcaacaatactcttacataccctctcaaattgaaatttcatatactcatatgtactaaag |
50513851 |
T |
|
| Q |
101 |
agttgttcataagacatatttataatcaatttatgcagcagttattagtcggtgtgaacttgaaaggctaagaataa-tttaaaaggttgaactcaaaat |
199 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
50513852 |
agttgttcataagacatatt----------------------tattagtctgtgtgaacttgaaaggctaagaataaatttaaaaggttgaactcaaaat |
50513929 |
T |
|
| Q |
200 |
aaacccataataaaacatttaaagagggtgcatcattccccctttctttacattaaaagttgggcacattcaagcctagaagaagaccgcacatctaata |
299 |
Q |
| |
|
||| ||| ||||||||||| |||||||||||||| || | |||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||| |
|
|
| T |
50513930 |
aaatccacaataaaacatt-aaagagggtgcatcctttcacctttctttacattaaaagttgggcacatttaagtctagaagaagaatgcacatctaata |
50514028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 7e-50; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 224 - 352
Target Start/End: Original strand, 38924568 - 38924696
Alignment:
| Q |
224 |
agggtgcatcattccccctttctttacattaaaagttgggcacattcaagcctagaagaagaccgcacatctaatatttaaacttataattaacatatta |
323 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38924568 |
agggtgcaacattttccctttctttacattaaaagttgggcacattcaaacctagaagaagaccgcacatctaatatttaaacttataattaacgtatta |
38924667 |
T |
|
| Q |
324 |
aactactttatattgttgacaatgatatc |
352 |
Q |
| |
|
||||| |||||||||||||||| |||||| |
|
|
| T |
38924668 |
aactaatttatattgttgacaacgatatc |
38924696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 38924510 - 38924568
Alignment:
| Q |
1 |
aagacacaataagatcacataagtttctaaaaattcttcttatacaatactcttacata |
59 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38924510 |
aagacacaataagatcacataagtttttaaaaattcttcttatacaatactcttacata |
38924568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 448
Target Start/End: Original strand, 38924784 - 38924812
Alignment:
| Q |
420 |
agtgtaacttgaatcatatctttcacctt |
448 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
38924784 |
agtgtaacttgaatcatatctttcacctt |
38924812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0770 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0770
Description:
Target: scaffold0770; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 4586 - 4518
Alignment:
| Q |
37 |
ttcttatacaatactcttacataccctctcaaattgaaatttcatacactca-tatgtattaaggagttgttca |
109 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
4586 |
ttcttctacaatactctta-----cctctcaaattgaaatttcatacactcattatgtactaaggagttgttca |
4518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 102890 - 102822
Alignment:
| Q |
37 |
ttcttatacaatactcttacataccctctcaaattgaaatttcatacactca-tatgtattaaggagttgttca |
109 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
102890 |
ttcttctacaatactctta-----cctctcaaattgaaatttcatacactcattatgtactaaggagttgttca |
102822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University