View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14304_high_8 (Length: 436)
Name: NF14304_high_8
Description: NF14304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14304_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 11 - 417
Target Start/End: Original strand, 34626347 - 34626752
Alignment:
| Q |
11 |
cagagaatctgatgatgctattattatcattattattttctccttgtagctatatgcatttatagaagaaaattgaaggaacagnnnnnnnnccttcaag |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34626347 |
cagagaatctgatgatgctattattatcattattattttctccttgtagctatatgcatttatagaagaaaattgaaggaacagaaaaaaa-ccttcaag |
34626445 |
T |
|
| Q |
111 |
tagtgcatcacgaacttcttctagtgtcacatttaatgctcgcaagagaattgataaattttgtgctttctttgagtcaatgatttggatatactgaggt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34626446 |
tagtgcatcacgaacttcttctagtgtcacatttaatgctcgcaagagaattgataaattttgtgctttctttgagtcaatgatttggatatactgaggt |
34626545 |
T |
|
| Q |
211 |
gtatcacgtaaggaagactctttcttatgtccacctttgagtttatcattctgttgagtatatccaaaaagagattccatcatttcttcattaaacctgt |
310 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34626546 |
gtatcacgtaaggaagactctttcctatgtccacctttgagtttatcattctgttgagtatatccaaaaagagattccatcatttcttcattaaacctgt |
34626645 |
T |
|
| Q |
311 |
cacatattcgatcatcatcaacaacattagccatgtaacacctatccatggtagattattttttatccgcatcaaaagaagatgttagctcagtagtaag |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34626646 |
cacatattcgatcatcatcaacaacattagccatgtaacacctatccatggtagattattttttatccgcatcaaaagaagatgttagctcagtagtaag |
34626745 |
T |
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| Q |
411 |
agttcgg |
417 |
Q |
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| T |
34626746 |
agttcgg |
34626752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 31564723 - 31564624
Alignment:
| Q |
112 |
agtgcatcacgaacttcttctagtgtcacatttaatgctcgcaagagaattgataaattttgtgctttctttgagtcaatgatttggatatactgaggtg |
211 |
Q |
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|||||||||| ||||||||| | ||||| || ||||| ||||| |||||| |||||||||||||||||||| ||| | ||| |||||||| ||||||| |
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| T |
31564723 |
agtgcatcacaaacttcttccatcgtcacgttcaatgcgcgcaacagaattaataaattttgtgctttctttttgtcgacgatctggatatattgaggtg |
31564624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 191
Target Start/End: Complemental strand, 15511752 - 15511673
Alignment:
| Q |
112 |
agtgcatcacgaacttcttctagtgtcacatttaatgctcgcaagagaattgataaattttgtgctttctttgagtcaat |
191 |
Q |
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||||||||| ||||||| || ||||||||| | || ||||| |||||||||||||| ||||||||||||| |||||| |
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| T |
15511752 |
agtgcatcaacaacttctgctgttgtcacattcagagcacgcaaaagaattgataaattctgtgctttctttgggtcaat |
15511673 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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