View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14304_high_9 (Length: 417)

Name: NF14304_high_9
Description: NF14304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14304_high_9
NF14304_high_9
[»] chr8 (3 HSPs)
chr8 (1-256)||(2558822-2559077)
chr8 (252-398)||(2559130-2559276)
chr8 (305-396)||(2551548-2551639)
[»] chr4 (5 HSPs)
chr4 (116-208)||(25642261-25642353)
chr4 (139-208)||(18997671-18997740)
chr4 (103-201)||(10169172-10169270)
chr4 (148-201)||(29277840-29277893)
chr4 (93-129)||(5334873-5334909)
[»] chr2 (1 HSPs)
chr2 (139-205)||(35246872-35246938)
[»] chr1 (1 HSPs)
chr1 (94-147)||(34049411-34049464)
[»] chr7 (1 HSPs)
chr7 (22-70)||(21602398-21602446)


Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 2558822 - 2559077
Alignment:
Q  1 ttgcatttatattcaactattcggttatatgtcattgaatcaattgtctattttgctcagcaacggaagtcgacaggtaaaatgaatttcatgtcgtttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  2558822 ttgcatttatattcaactattcggttatatgtcattgaatcaattgtctattttgctcaacatcggaagtcgacaggtaaaatgaatttcatgtcgtttt 2558921  T
Q  101 ctagacatggaaacatatgatgagggataagtgaagtaataattgaaatagaagaaatatataatcgattaaggaaggtcattagacaaatagttaacaa 200  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2558922 ccagacatggaaacatatgatgagggataagtgaagtaataattgaaatagaaggaatatataatcgattaaggaaggtcattagacaaatagttaacaa 2559021  T
Q  201 agcttaatacgttctctctgatctttgtttcatcacttacactacacctacgacag 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2559022 agcttaatacgttctctctgatctttgtttcatcacttacactacacctactacag 2559077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 252 - 398
Target Start/End: Original strand, 2559130 - 2559276
Alignment:
Q  252 gacaggttatggtattgcacgtgtctcgttagatttgatgttttattttttataaaaccggcatacttactattatacgaaggaccgaaaaatccttcgt 351  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2559130 gacaggttatggtattgcatgtgtctcgttagatttgatgttttatttttgataaaaccggcatacttactattatacgaaggactgaaaaatccttcgt 2559229  T
Q  352 attactagtccaagtgaagacttgcaatgaagtctgtaggaggatct 398  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  2559230 attactagtccaagtgaagacttgcaatgaagtctgtaggaggatct 2559276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 305 - 396
Target Start/End: Original strand, 2551548 - 2551639
Alignment:
Q  305 aaaaccggcatacttactattatacgaaggaccgaaaaatccttcgtattactagtccaagtgaagacttgcaatgaagtctgtaggaggat 396  Q
    ||||| |||||||||||| |||||  ||||||| |||||| |||| ||| |||||||||||||||||||| ||||||||| |||||||||||    
T  2551548 aaaactggcatacttactgttatataaaggacctaaaaattcttcttatcactagtccaagtgaagacttccaatgaagtatgtaggaggat 2551639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 116 - 208
Target Start/End: Original strand, 25642261 - 25642353
Alignment:
Q  116 tatgatgagggataagtgaagtaataattgaaatagaagaaatatataatcgattaaggaaggtcattagacaaatagttaacaaagcttaat 208  Q
    |||| ||||||||| ||  |||||||||||||||| ||| |  |||||||||||||||||| |  ||||||||||||||| |||| |||||||    
T  25642261 tatgttgagggatatgttgagtaataattgaaataaaaggaggatataatcgattaaggaatgatattagacaaatagttcacaaggcttaat 25642353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 139 - 208
Target Start/End: Original strand, 18997671 - 18997740
Alignment:
Q  139 ataattgaaatagaagaaatatataatcgattaaggaaggtcattagacaaatagttaacaaagcttaat 208  Q
    |||||||||||| ||| | ||||||||||||| |||||||  ||||||||||||||| |  |||||||||    
T  18997671 ataattgaaataaaaggagtatataatcgattcaggaaggatattagacaaatagttcatgaagcttaat 18997740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 201
Target Start/End: Original strand, 10169172 - 10169270
Alignment:
Q  103 agacatggaaacatatgatgagggataagtgaagtaataattgaaatagaagaaatatataatcgattaaggaaggtcattagacaaatagttaacaaa 201  Q
    ||||||| |||||||  || ||||| |  ||||| |||||||||||||| || | |||||||| |||  |||||||||||||||| | |||||| ||||    
T  10169172 agacatgaaaacatacaataagggacagttgaaggaataattgaaataggaggagtatataattgatctaggaaggtcattagacgattagttatcaaa 10169270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 201
Target Start/End: Complemental strand, 29277893 - 29277840
Alignment:
Q  148 atagaagaaatatataatcgattaaggaaggtcattagacaaatagttaacaaa 201  Q
    ||||| ||| |||||| |||||||||||||| ||||||| || |||||||||||    
T  29277893 atagatgaagtatatactcgattaaggaagggcattagataattagttaacaaa 29277840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 129
Target Start/End: Complemental strand, 5334909 - 5334873
Alignment:
Q  93 gtcgttttctagacatggaaacatatgatgagggata 129  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  5334909 gtcgttttctagacatggaaacgtataatgagggata 5334873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 205
Target Start/End: Original strand, 35246872 - 35246938
Alignment:
Q  139 ataattgaaatagaagaaatatataatcgattaaggaaggtcattagacaaatagttaacaaagctt 205  Q
    |||| |||||||| ||||||||||||||||||||||||||  |||| | || |||||||| ||||||    
T  35246872 ataactgaaataggagaaatatataatcgattaaggaaggaaattaaataattagttaacgaagctt 35246938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 34049411 - 34049464
Alignment:
Q  94 tcgttttctagacatggaaacatatgatgagggataagtgaagtaataattgaa 147  Q
    |||||| ||||||||||||||||| |||||||||||||||| || ||| |||||    
T  34049411 tcgtttactagacatggaaacatacgatgagggataagtgaggttatatttgaa 34049464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 21602446 - 21602398
Alignment:
Q  22 cggttatatgtcattgaatcaattgtctattttgctcagcaacggaagt 70  Q
    |||| ||||| ||| ||||||||  ||||||||||||||||||||||||    
T  21602446 cggtcatatgccatggaatcaataatctattttgctcagcaacggaagt 21602398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University