View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14304_low_11 (Length: 384)
Name: NF14304_low_11
Description: NF14304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14304_low_11 |
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| [»] chr6 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 40 - 384
Target Start/End: Original strand, 6806738 - 6807096
Alignment:
| Q |
40 |
aaaaactatattcaattatataagttataataatcaaattaaagtgtttttatttataagaagtaaaattaaaaa-----------tgaatctgttagag |
128 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
6806738 |
aaaaactatattcaattatataagttataataatcaaattaaagtgtttttatttataagaagtaaaattaaaaagtgattaaaaatgaatctgttagag |
6806837 |
T |
|
| Q |
129 |
ggagaaagtgattatgtgatagttactgaatttgttcgtnnnnnnnnttaattattcttcgtgacatttttgtgagtgagttgagttaatcagtctgaag |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6806838 |
ggagaaagtgattatgtgatagttactgaatttgttcgtaaaaaaaattaattattcttcgtgacatttttgtgagtgagttgagttaatcagtctgaag |
6806937 |
T |
|
| Q |
229 |
ctcccttccagtcgcagccgcctttagctcgcatttcactcccatcttcagacgtcgaactcgcaatcgataactctgacaggtatttccaatatgattc |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6806938 |
ctcccttccagtcgcagccgcctttagctcgcatttcactcccatcgtcagacgtcgaactcgcaatcgataactctgacaggtatttccaatatgattc |
6807037 |
T |
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| Q |
329 |
gctacccttcctctatt---ctcatttacaaatttcaatgacatgttaatcgtgctttt |
384 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
6807038 |
gctacccttcctctattctcctcatttacaaatttcaatgacatgttaatcgtgctttt |
6807096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 40 - 381
Target Start/End: Original strand, 29947017 - 29947372
Alignment:
| Q |
40 |
aaaaactatattcaattatataagttataataatcaaattaaagtgtttttatttataagaagtaaaattaaaaa-----------tgaatctgttagag |
128 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
29947017 |
aaaaactatattcaattatataagttataataatcaaattaaagtgtttttatttataagaagtaaaattaaaaagtgattaaaaatgaatctgttagag |
29947116 |
T |
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| Q |
129 |
ggagaaagtgattatgtgatagttactgaatttgttcgtnnnnnnnnttaattattcttcgtgacatttttgtgagtgagttgagttaatcagtctgaag |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29947117 |
ggagaaagtgattatgtgatagttactgaatttgttcgtaaagaaaattaattattcttcgtgacatttttgtgagtgagttgagttaatcagtctgaag |
29947216 |
T |
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| Q |
229 |
ctcccttccagtcgcagccgcctttagctcgcatttcactcccatcttcagacgtcgaactcgcaatcgataactctgacaggtatttccaatatgattc |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29947217 |
ctcccttccagtcgcagccgcctttagctcgcatttcactcccatcgtcagacgtcgaactcgcaatcgataactctgacaggtatttccaatatgattc |
29947316 |
T |
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| Q |
329 |
gctacccttcctctatt---ctcatttacaaatttcaatgacatgttaatcgtgct |
381 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
29947317 |
gctacccttcctctattctcctcatttacaaatttcaatgacatgttaatcgtgct |
29947372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 40 - 384
Target Start/End: Complemental strand, 16930128 - 16929772
Alignment:
| Q |
40 |
aaaaactatattcaattatataagttataataatcaaattaaagtgtttttatttataagaagtaaaattaaaaa-----------tgaatctgttagag |
128 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||| |||||| |
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| T |
16930128 |
aaaaactatattcaattatataagttataataatcaaattaaagtgtttttgttgataagaagtaaaattaaaaagtgattaaaaatgaatcttttagag |
16930029 |
T |
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| Q |
129 |
ggagaaagtgattatgtgatagttactgaatttgttcgtnnnnnnnnttaattattcttcgtgacatttttgtgagtgagttgagttaatcagtctgaag |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
16930028 |
ggagaaagtgattatgtgatagttactgaatttgttcgtaaaaaaaattaattattcttcgtgacatttttgtgagagagttgagttaatcagtctgaag |
16929929 |
T |
|
| Q |
229 |
ctcccttccagtcgcagccgcctttagctcgcatttcactcccatcttcagacgtcgaactcgcaatcgataactctgacaggtatttccaatatgattc |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16929928 |
ctcccttccagtcgcagccgcctttagctcgcatttcactcccatcgtcagacgtcgaactcgcaatcgataactctgacaggtatttccaatatgattc |
16929829 |
T |
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| Q |
329 |
gctacccttcctctattctca-tttacaaatttcaatgacatgttaatcgtgctttt |
384 |
Q |
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| T |
16929828 |
gctacccttcctctattttcattttacaaatttcaatgacatgttaatcgtgctttt |
16929772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 59 - 384
Target Start/End: Complemental strand, 35449870 - 35449540
Alignment:
| Q |
59 |
ataagttataataatcaaattaaagtgtttttatttataagaagtaaaattaaaaa-----------tgaatctgttagagggagaaagtgattatgtga |
147 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
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| T |
35449870 |
ataagttataataatcaaattaaagtgtttttatttataagaagtaaaattaaaaagtgattaaaaatgaatctgttagagggagaaagtgattatgtaa |
35449771 |
T |
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| Q |
148 |
tagttactgaatttgttcgtnnnnnnnnttaattattcttcgtgacatttttgtgagtgagttgagttaatcagtctgaagctcccttccagtcgcagcc |
247 |
Q |
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| T |
35449770 |
tagttactgaatttgttcgtaaaaaaaattaattattcttcgtgacatttttgtgagtgagttgagttaatcagtctgaagctcccttccagtcgcagcc |
35449671 |
T |
|
| Q |
248 |
gcctttagctcgcatttcactcccatcttcagacgtcgaactcgcaatcgataactctgacaggtatttccaatatgattcgctacccttcctctattct |
347 |
Q |
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| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35449670 |
gtctttagctcgcatttcactcccatcgtcagacgtcgaactcgcaatcgataactctgacaggtatttccaatatgattcgctacccttcctctattct |
35449571 |
T |
|
| Q |
348 |
catttacaaatttcaatgacatgttaatcgtgctttt |
384 |
Q |
| |
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||||||| |||||||||||||||||||||||| |
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| T |
35449570 |
catttac------caatgacatgttaatcgtgctttt |
35449540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 4e-51; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 278 - 384
Target Start/End: Complemental strand, 38871918 - 38871812
Alignment:
| Q |
278 |
agacgtcgaactcgcaatcgataactctgacaggtatttccaatatgattcgctacccttcctctattctcatttacaaatttcaatgacatgttaatcg |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38871918 |
agacgtcgaactcgcaatcgataactctgacaggtatttccaatatgattcgctacccttcctctattctcatttacaaatttcaatgacattttaatcg |
38871819 |
T |
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| Q |
378 |
tgctttt |
384 |
Q |
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||||||| |
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| T |
38871818 |
tgctttt |
38871812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 40 - 103
Target Start/End: Original strand, 10510102 - 10510165
Alignment:
| Q |
40 |
aaaaactatattcaattatataagttataataatcaaattaaagtgtttttatttataagaagt |
103 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
10510102 |
aaaaactatattcaattatataagttataataatcaaattaaagtgtttttatttataaaaagt |
10510165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 38871968 - 38871931
Alignment:
| Q |
40 |
aaaaactatattcaattatataagttataataatcaaa |
77 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
38871968 |
aaaaactatattcaattatataagttataataatcaaa |
38871931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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