View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14304_low_12 (Length: 375)
Name: NF14304_low_12
Description: NF14304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14304_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 49266515 - 49266155
Alignment:
| Q |
1 |
tgtgcagagagatcaaaattgctgagttcctcgagtcctaaggcagaattggagagtgtctcgggtcctaagacgcgtgatgaggcagaagccaatccgc |
100 |
Q |
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| T |
49266515 |
tgtgcagagagatcaaaattgctgagttcctcgagtcctaaggcagaattggagagtgtctcgggtcctaagacgcgtgatgaggcagaagccaatccgc |
49266416 |
T |
|
| Q |
101 |
gtgcacgtacattcacattacaagagcttaaagccgcaaccaacaactttgcgccggaatgttttataggtgaagggggctttgggcctgtatacaaagg |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49266415 |
gtgcacatacattcacattacaagagcttaaagccgcaaccaataactttgcgccggaatgttttataggtgaagggggctttgggcctgtatacaaagg |
49266316 |
T |
|
| Q |
201 |
ttaccttgagagcgctaaaaacgtaagttgtgatagctgttgcaaagattttggtttttgcaaatgctagttcatccaagcataaactatatgtagtggt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49266315 |
ttaccttgagagcgctaaaaacgtaagttgtgatagctgttgcaaagattttggtttttgcaaatgctagttcatccaagcataaactatatgtagtggt |
49266216 |
T |
|
| Q |
301 |
caatttttcatttcattaacattgtacattttaaatatgtgtgaatgaaaaatgatgtttg |
361 |
Q |
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| T |
49266215 |
caatttttcatttcattaacattgtacattttaaatatgtgtgaatgaaaaatgatgtttg |
49266155 |
T |
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