View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14304_low_13 (Length: 373)
Name: NF14304_low_13
Description: NF14304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14304_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 19 - 365
Target Start/End: Complemental strand, 51211773 - 51211431
Alignment:
| Q |
19 |
taaacctcctaaaaaacatgacacatattgtatgaattttcctacctgcagaacatatatatccaccaaaaaaggaagaatgagttattattatcttcga |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
51211773 |
taaacctcctaaaaaacatgacacatattgtatgaattttcctacctgcagaacatat----ccaccaaaaaaggaagaatgagttattattatcttcga |
51211678 |
T |
|
| Q |
119 |
attttgttatcatggttagatcaaatgatgctgcattcataccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51211677 |
attttgttatcatggttagatcaaatgatgctgcattcataccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacc |
51211578 |
T |
|
| Q |
219 |
tcaccactatttgtttccttgtcaaagaaactgatatcttgccttaaaattgctttgaggtataatgcccttattcttgcagcctgtctctcccctgtga |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51211577 |
tcaccactatttgtttccttgtcaaagaaactgatatcttgccttaaaattgctttgaggtataatgcccttattcttgcagcctgtctctcccctgtga |
51211478 |
T |
|
| Q |
319 |
tcatccaacaagacacctctgcaaaatttcatgtatttacctttgct |
365 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51211477 |
tcatccaacaagacacctctgcaaaatttcatgtatttacctttgct |
51211431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 152 - 339
Target Start/End: Complemental strand, 51198118 - 51197931
Alignment:
| Q |
152 |
cattcataccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcaccactatttgtttccttgtcaaagaaactg |
251 |
Q |
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|||| ||||||| || |||||||| |||||||||||||| |||||||| |||||||||||||||||||| ||| |||| |||||||| ||||||||||| |
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| T |
51198118 |
cattaataccttctcacccatggcatcttgaataagaacagtatcaccagacattcttccaacaacctctccagtattagtttccttatcaaagaaactc |
51198019 |
T |
|
| Q |
252 |
atatcttgccttaaaattgctttgaggtataatgcccttattcttgcagcctgtctctcccctgtgatcatccaacaagacacctctg |
339 |
Q |
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| ||||||||| ||||||| || ||||||||| || |||||||||||||||||||| || || |||||||| |||| || ||||| |
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| T |
51198018 |
acatcttgcctcaaaattgtttggaggtataagcttctgattcttgcagcctgtctctcaccggtaatcatccagcaagtcaactctg |
51197931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 152 - 330
Target Start/End: Complemental strand, 51155603 - 51155425
Alignment:
| Q |
152 |
cattcataccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcaccactatttgtttccttgtcaaagaaactg |
251 |
Q |
| |
|
|||| ||||||| || |||||||| |||| ||| |||| ||||||||||||||| |||||||||||||| ||| |||| |||||||| |||||||| || |
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| T |
51155603 |
cattgataccttctcccccatggcatctttaattagaaatgtatcacctgacatccttccaacaacctctccagtattagtttccttatcaaagaagctc |
51155504 |
T |
|
| Q |
252 |
atatcttgccttaaaattgctttgaggtataatgcccttattcttgcagcctgtctctcccctgtgatcatccaacaag |
330 |
Q |
| |
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| ||||||||| ||||||| ||| |||||||| | || ||||||||| |||||||||||| |||||||||||||||| |
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| T |
51155503 |
acatcttgcctcaaaattgttttaaggtataaccctctaattcttgcactctgtctctccccggtgatcatccaacaag |
51155425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 157 - 330
Target Start/End: Complemental strand, 51144458 - 51144285
Alignment:
| Q |
157 |
ataccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcaccactatttgtttccttgtcaaagaaactgatatc |
256 |
Q |
| |
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||||||| || |||||||| || | ||||||||| ||||||||||||||||||||||||||||| || |||| |||||||| ||||||||||| | ||| |
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| T |
51144458 |
ataccttctcacccatggcatccttaataagaacagtatcacctgacattcttccaacaacctctcccgtattagtttccttatcaaagaaactcacatc |
51144359 |
T |
|
| Q |
257 |
ttgccttaaaattgctttgaggtataatgcccttattcttgcagcctgtctctcccctgtgatcatccaacaag |
330 |
Q |
| |
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|||||| ||||||| ||| || ||||| | || ||||||||| |||||||||||| ||||||||||| |||| |
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| T |
51144358 |
ttgcctcaaaattgttttaagatataaccctctaattcttgcactctgtctctccccggtgatcatccagcaag |
51144285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 152 - 330
Target Start/End: Original strand, 29938480 - 29938658
Alignment:
| Q |
152 |
cattcataccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcaccactatttgtttccttgtcaaagaaactg |
251 |
Q |
| |
|
|||| ||||||| || |||||||| |||| ||||||||| || ||||||| ||| |||||||||||||| ||| | || ||||| || ||||| || || |
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| T |
29938480 |
cattgataccttctcccccatggcatctttaataagaacagtgtcacctgccatccttccaacaacctctccagtgttagtttctttatcaaaaaagctc |
29938579 |
T |
|
| Q |
252 |
atatcttgccttaaaattgctttgaggtataatgcccttattcttgcagcctgtctctcccctgtgatcatccaacaag |
330 |
Q |
| |
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| ||||||||| ||||||| ||| |||||||| | || ||||||||| |||||||||||| ||||||||||| |||| |
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| T |
29938580 |
acatcttgcctcaaaattgttttaaggtataagcctctaattcttgcactctgtctctccccagtgatcatccagcaag |
29938658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 19 - 351
Target Start/End: Original strand, 49738399 - 49738729
Alignment:
| Q |
19 |
taaacctcctaaaaaacatgacacatattgtatgaattttcctacctgcagaacatatatatccaccaaaaaaggaagaatgagttattattatcttcga |
118 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||||||||||| |||| |||| | |||||||||||||||| || |||||| | | | |
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| T |
49738399 |
taaacctcctaaaaaagatgacacatactgtatgaattttcctacctg-agaagatat----cacccaaaaaaggaagaataagctattat---ccttaa |
49738490 |
T |
|
| Q |
119 |
attttgttatcatggttagatcaaatgatgctgcattcata------ccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttcca |
212 |
Q |
| |
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| |||||||||| ||||||||||||||| |||||| ||| |||| ||||||||||| ||||||||||||||||| |||||||| ||||||||| |
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| T |
49738491 |
aacttgttatcatagttagatcaaatgattatgcattaatagaaataccttctctcccatggcatcttgaataagaactgtgtcacctgatattcttcca |
49738590 |
T |
|
| Q |
213 |
acaacctcaccactatttgtttccttgtcaaagaaactgatatcttgccttaaaattgctttgaggtataatgcccttattcttgcagcctgtctctccc |
312 |
Q |
| |
|
||||||||| |||| ||||||||| |||||||||| || |||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||| |
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|
| T |
49738591 |
acaacctcaacactgtttgtttccctgtcaaagaagcttatatcttgccttaaaattgctttgaggtataaggcccgtattcttgcagcttgtctctccc |
49738690 |
T |
|
| Q |
313 |
ctgtgatcatccaacaagacacctctgcaaaatttcatg |
351 |
Q |
| |
|
| |||| ||||||||| | ||||||||||| |||||||| |
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|
| T |
49738691 |
cggtgaccatccaacatgccacctctgcaagatttcatg |
49738729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 158 - 338
Target Start/End: Complemental strand, 36284848 - 36284665
Alignment:
| Q |
158 |
taccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcaccactatttgt---ttccttgtcaaagaaactgata |
254 |
Q |
| |
|
|||||| || ||||| || ||||||||||||| ||| |||| |||||| |||||||||||||| ||| |||| || |||| |||||||||| || || |
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| T |
36284848 |
taccttctcacccattgcatcttgaataagaattgtgtcacttgacatccttccaacaacctcgccagtattagtttcttccatgtcaaagaagctcgta |
36284749 |
T |
|
| Q |
255 |
tcttgccttaaaattgctttgaggtataatgcccttattcttgcagcctgtctctcccctgtgatcatccaacaagacacctct |
338 |
Q |
| |
|
|||||||| ||||||||| |||||||||| | ||||||| || ||||||||||| |||| ||||| |||||||||||| |
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|
| T |
36284748 |
tcttgcctcaaaattgctctgaggtataaatttcgaattcttgatgcttgtctctccccagtgactatccagcaagacacctct |
36284665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 154 - 339
Target Start/End: Original strand, 38527178 - 38527363
Alignment:
| Q |
154 |
ttcataccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcaccactatttgtttccttgtcaaagaaactgat |
253 |
Q |
| |
|
|||||||||| || |||||||| |||||||||||||| |||||||| ||||||||||| ||||| || || | |||||||| || ||||||||| | | |
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|
| T |
38527178 |
ttcataccttctcacccatggcatcttgaataagaacagtatcaccagacattcttcctacaacttctcctgtgtttgtttctttatcaaagaaagtaac |
38527277 |
T |
|
| Q |
254 |
atcttgccttaaaattgctttgaggtataatgcccttattcttgcagcctgtctctcccctgtgatcatccaacaagacacctctg |
339 |
Q |
| |
|
|||||| ||||| |||| ||| | || ||| | |||||||||||||| ||||| || ||||| | |||||||||| |||||||| |
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|
| T |
38527278 |
atcttgtcttaatattgttttcaaatacaatcctcttattcttgcagcttgtctttctcctgttaccatccaacaactcacctctg |
38527363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 153 - 339
Target Start/End: Original strand, 38568478 - 38568664
Alignment:
| Q |
153 |
attcataccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcaccactatttgtttccttgtcaaagaaactga |
252 |
Q |
| |
|
||||||||||| || |||||||| |||||||||||||| ||||||||||||||||| || | ||| || || | |||||||| || ||||||||| | | |
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|
| T |
38568478 |
attcataccttctcacccatggcatcttgaataagaacagtatcacctgacattctccctataacttctcctgtgtttgtttctttatcaaagaaagtaa |
38568577 |
T |
|
| Q |
253 |
tatcttgccttaaaattgctttgaggtataatgcccttattcttgcagcctgtctctcccctgtgatcatccaacaagacacctctg |
339 |
Q |
| |
|
|||||| ||||| |||| ||| | || ||| | |||||||||||||| ||||| || ||||| | |||||||||| |||||||| |
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|
| T |
38568578 |
catcttgtcttaatattgttttcaaatacaatcctcttattcttgcagcttgtctttctcctgtaaccatccaacaactcacctctg |
38568664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 226
Target Start/End: Complemental strand, 5821219 - 5821153
Alignment:
| Q |
160 |
ccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcaccact |
226 |
Q |
| |
|
|||| ||||||||||| |||||||| |||| |||||||| ||||||||||||| |||||| ||||| |
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|
| T |
5821219 |
ccttttctcccatggcatcttgaatgagaatggtatcaccagacattcttccaataacctctccact |
5821153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 213
Target Start/End: Complemental strand, 5764298 - 5764242
Alignment:
| Q |
157 |
ataccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaa |
213 |
Q |
| |
|
||||||| ||||||||||| |||||||| |||| ||| ||||| |||||||| |||| |
|
|
| T |
5764298 |
ataccttttctcccatggcatcttgaatgagaattgtgtcaccagacattctaccaa |
5764242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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