View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14304_low_14 (Length: 364)
Name: NF14304_low_14
Description: NF14304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14304_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 47765445 - 47765092
Alignment:
| Q |
1 |
atgtattaagcctttaattttattt----gtgaatttttgaagagtttgattccatattagtcgggatttttacggtgtatcaatgataactttcttgag |
96 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
47765445 |
atgtattaagcctttaattttatttatttgtgaatttttgaagagtttgattccatattagtcgggatttttacggtgaatcaatgataactttcttgag |
47765346 |
T |
|
| Q |
97 |
tcagtcctataattcctttatgcttcttttgttacagtcatggtttgttatattaagtaagatttcttaaatttaaagattactactcttttcttgagtt |
196 |
Q |
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| T |
47765345 |
tcagtcctataattcctttatgcttcttttgttacagtcatggtttgttatattaagtaagatttcttaaatttaaagattactactcttttcttgagtt |
47765246 |
T |
|
| Q |
197 |
catagacaacctcttccttttgagtttgagttccaacttctccattcgtacgaaattaaataacaagctaatcgtggatgatgtcaacaatctgaggtat |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
47765245 |
catagacaacctcttccttttgagtttgagttccaacttctccattcgtacgaaattaaataacaagctaatcgtggatgatgccaactatctgaggtat |
47765146 |
T |
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| Q |
297 |
catggcctctatgatgtagttaatgaagtggtaaagtttccacacgagagaggt |
350 |
Q |
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| T |
47765145 |
catggcctctatgatgtagttaatgaagtggtaaagtttccacacgagagaggt |
47765092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 166; Significance: 9e-89; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 136 - 350
Target Start/End: Complemental strand, 30435516 - 30435300
Alignment:
| Q |
136 |
atggtttgttatattaagtaagatttcttaaatttaaagattactactcttttcttgagttcatagacaacctcttccttttgagtttgagttccaactt |
235 |
Q |
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| T |
30435516 |
atggtttgttatatcaagtaagatttcttaaataaaaagattactactcttttcttgagttcatagacaacctcttccttttgagtttgagttccaactt |
30435417 |
T |
|
| Q |
236 |
ctcc--attcgtacgaaattaaataacaagctaatcgtggatgatgtcaacaatctgaggtatcatggcctctatgatgtagttaatgaagtggtaaagt |
333 |
Q |
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|||| |||| || |||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
30435416 |
ctccatattcatatgaaattaaataacatcctaatcctggatgatgtcaacaatgtgaggtatcatggcctctatgatgtagttaatgaagtggtagagt |
30435317 |
T |
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| Q |
334 |
ttccacacgagagaggt |
350 |
Q |
| |
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||||||||||||||||| |
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| T |
30435316 |
ttccacacgagagaggt |
30435300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 13 - 127
Target Start/End: Complemental strand, 30435869 - 30435755
Alignment:
| Q |
13 |
tttaattttatttgtgaatttttgaagagtttgattccatattagtcgggatttttacggtgtatcaatgataactttcttgagtcagtcctataattcc |
112 |
Q |
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||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||| ||| ||||||| ||||| | ||||||||||||| ||||||| |
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| T |
30435869 |
tttaattttatttatgaatttttgaagagtttgattcattattagccgggatttttacagtgaatcaatggtaactatattgagtcagtcctctaattcc |
30435770 |
T |
|
| Q |
113 |
tttatgcttcttttg |
127 |
Q |
| |
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||||||||||||||| |
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| T |
30435769 |
tttatgcttcttttg |
30435755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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