View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14304_low_2 (Length: 616)
Name: NF14304_low_2
Description: NF14304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14304_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 22 - 600
Target Start/End: Original strand, 15501741 - 15502332
Alignment:
| Q |
22 |
attgtggattaagtacccctccttcctttccaataaaattggccgttnnnnnnnncattcaacataaaaacctttttaataaat----tgtaactgacct |
117 |
Q |
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| T |
15501741 |
attgtggattaagtacccctccctcctttccaataaaattggccgttaaaaaaaacattcaacataaaaacctttttaataaataatttgtaagtgacct |
15501840 |
T |
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| Q |
118 |
tattaacatttgttttgactcaaattctattctcatt-----gatcttctcgatccaactcatctaaactttataacacccaaatttcaaggaatcaaaa |
212 |
Q |
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| T |
15501841 |
tattaacatttgttttgactcaaattctattctcactctggtgatctcctagaaccaactcatctaaactttataacacccaaatttcaaggaatcaaaa |
15501940 |
T |
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| Q |
213 |
nnnnnnnnnnnnnnnnn--acatcaaagccccactcatatcgtgacttcaaagcaatcaataatttatacgtaccaccccttta--------acttttta |
302 |
Q |
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| T |
15501941 |
tttttttttctttttttttacatcaaagccccact----tcgtgacttcaaagcaatcaataatttatacgtaccacccctttatacatttaacttttta |
15502036 |
T |
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| Q |
303 |
tttgtgtccttcnnnnnnnnnnnnnnnnnnctttttatttgtggtgaatatcaatctcagtatctttcataatcaataggtatgggataactttgatatt |
402 |
Q |
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|||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||| |||| ||||||||||||||| |
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| T |
15502037 |
tttgtgtccttcaaaacaaaaacaaaaaaactttttatttgtggcgaatatcaatctctgtatctttcataatcaatagctatgtgataactttgatatt |
15502136 |
T |
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| Q |
403 |
cactcaagttataaatagagcagcatcaacggcaaaattgcaagcagcaatatggctactttgaacaaaaacatgcttctaaattatgttccagtttatg |
502 |
Q |
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| T |
15502137 |
cactcaagttataaatagagcaacatcaacggcaaaattgcaagcagcaatatggctactttgaacaaaaacatgcttctaaattatgttccagtttatg |
15502236 |
T |
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| Q |
503 |
tcatgctcccagtaagtcctcatacacataaattactgtgtttgtaagctcataaatatgtgtttgttcactaatattaacttatgtttcattgtttt |
600 |
Q |
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| T |
15502237 |
tcatgctcccagtaagtcctcatacacataaattactgtgtttgtgagctcataaata--tgtttgttcactaatattaacttatgtttcattgtttt |
15502332 |
T |
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