View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14304_low_21 (Length: 270)
Name: NF14304_low_21
Description: NF14304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14304_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 42918010 - 42918271
Alignment:
| Q |
1 |
tgtatgattgaaatcatgaaagtaaaaggtacccacaactacaagattccacatatgaaaaaagaacaattagaaagaagaaaggaattgccaacacaaa |
100 |
Q |
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| T |
42918010 |
tgtatgattgaaatcatgaaagtaaaaggtacccacaactacaagattccacatatgaaaaaagaacaattagaaagaagaaaggaattgccaacacaaa |
42918109 |
T |
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| Q |
101 |
ggaaatgtgatattcaattggtgcaagaggttcttagttatttagatcaataggtggaaaagaatagtgagatgttgaagttactttcatttttgtgttt |
200 |
Q |
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| T |
42918110 |
ggaaatgtgatattcaattggtgcaagaggttcttagttatttagatcaataggtggaaaagaatagtgagatgttgaagttactttcatttttgtgttt |
42918209 |
T |
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| Q |
201 |
tgagtattgcttggatttattcactgttagaatatgctactgaatggttatgaagaattatc |
262 |
Q |
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| T |
42918210 |
tgagtattgcttggatttattcactgttagaatatgctactgaatggttatgaagaattatc |
42918271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 23254900 - 23255161
Alignment:
| Q |
1 |
tgtatgattgaaatcatgaaagtaaaaggtacccacaactacaagattccacatatgaaaaaagaacaattagaaagaagaaaggaattgccaacacaaa |
100 |
Q |
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| T |
23254900 |
tgtatgattgaaatcatgaaagtaaaaggtacccacaactacaagattccacatatgaaaaaagaacaattagaaagaagaaaggaattgccaacacaaa |
23254999 |
T |
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| Q |
101 |
ggaaatgtgatattcaattggtgcaagaggttcttagttatttagatcaataggtggaaaagaatagtgagatgttgaagttactttcatttttgtgttt |
200 |
Q |
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| T |
23255000 |
ggaaatgtgatattcaattggtgcaagaggttcttagttatttagatcaataggtggaaaagaatagtgagatgttgaagttactttcatttttgtgttt |
23255099 |
T |
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| Q |
201 |
tgagtattgcttggatttattcactgttagaatatgctactgaatggttatgaagaattatc |
262 |
Q |
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| T |
23255100 |
tgagtattgcttggatttattcactgttagaatatgctactgaatggttatgaagaattatc |
23255161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 53535820 - 53536081
Alignment:
| Q |
1 |
tgtatgattgaaatcatgaaagtaaaaggtacccacaactacaagattccacatatgaaaaaagaacaattagaaagaagaaaggaattgccaacacaaa |
100 |
Q |
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| T |
53535820 |
tgtatgattgaaatcatgaaagtaaaaggtacccacaactacaagattccacatatgaagaaagaacaattagaaagaagaaaggaattgccaacacaaa |
53535919 |
T |
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| Q |
101 |
ggaaatgtgatattcaattggtgcaagaggttcttagttatttagatcaataggtggaaaagaatagtgagatgttgaagttactttcatttttgtgttt |
200 |
Q |
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| T |
53535920 |
ggaaatgtgatattcaattggtgcaagaggttcttagttatttagatcaataggtggaaaagaatagtgagatgttgaagttactttcatttttgtgttt |
53536019 |
T |
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| Q |
201 |
tgagtattgcttggatttattcactgttagaatatgctactgaatggttatgaagaattatc |
262 |
Q |
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| T |
53536020 |
tgagtattgcttggatttattcactgttagaatatgctactgaatggttatgaagaattatc |
53536081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 4755554 - 4755814
Alignment:
| Q |
1 |
tgtatgattgaaatcatgaaagtaaaaggtacccacaactacaagattccacatatgaaaaaagaacaattagaaagaagaaaggaattgccaacacaaa |
100 |
Q |
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| T |
4755554 |
tgtatgattgaaatcatgaaagtaaaaggtacccacaactacaagattccacatatgaaaaaagaacaattagaaagaagaaaggaattgccaacacaaa |
4755653 |
T |
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| Q |
101 |
ggaaatgtgatattcaattggtgcaagaggttcttagttatttagatcaataggtggaaaagaatagtgagatgttgaagttactttcatttttgtgttt |
200 |
Q |
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| T |
4755654 |
ggaaatgtgatattcaattggtgcaagaggttcttagttatttagatcaataggtggaaaagaatagtgagatgttgaagttactttcatttttgtgttt |
4755753 |
T |
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| Q |
201 |
tgagtattgcttggatttattcactgttagaatatgctactgaatggttatgaagaattatc |
262 |
Q |
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| T |
4755754 |
tgagtattgcttggatttattca-tgttagaatatgctactgaatggttatgaagaattatc |
4755814 |
T |
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