View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14304_low_24 (Length: 256)
Name: NF14304_low_24
Description: NF14304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14304_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 10 - 239
Target Start/End: Complemental strand, 23967392 - 23967163
Alignment:
| Q |
10 |
attatactgattgcgggagaaggtttcgtttcaaccacatcaatgtaatattttttattgttatatggaatcattatagtgcggccagttgttaaacatg |
109 |
Q |
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| T |
23967392 |
attatactgattgcgggagaaggtttcgtttcaaccacatcaatgtaatattttttattgttatatggaatcattatagtgcggccagttgttaaacatg |
23967293 |
T |
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| Q |
110 |
agtaactcctcaatgaagtttctaacctgcaaatcataaaagggaaaaagaaagatattatacatcgcaataagcaactattgagttcctcaatgaagtc |
209 |
Q |
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| T |
23967292 |
agtaactcctcaatgaagtttctaacctgcaaatcataaaggggaaaaagaaagatattatacatcgcaataagcaactattgagttcctcaatgaagtc |
23967193 |
T |
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| Q |
210 |
tctaataattaagttcttatagcatataca |
239 |
Q |
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| T |
23967192 |
tctaataattaagttcttatagcatataca |
23967163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 10 - 169
Target Start/End: Complemental strand, 23984324 - 23984165
Alignment:
| Q |
10 |
attatactgattgcgggagaaggtttcgtttcaaccacatcaatgtaatattttttattgttatatggaatcattatagtgcggccagttgttaaacatg |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
23984324 |
attatactgattgcgggagaaggtttcgtttcaaccacatcaatgtaatatttttttttgttatatggaatcattatggtgcggccggttgttaaacatg |
23984225 |
T |
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| Q |
110 |
agtaactcctcaatgaagtttctaacctgcaaatcataaaagggaaaaagaaagatatta |
169 |
Q |
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| T |
23984224 |
agtaactcctcaatgaagtttctaacctgcaaatgatcaaggggaagaaaaaagatatta |
23984165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 10 - 169
Target Start/End: Complemental strand, 23990986 - 23990827
Alignment:
| Q |
10 |
attatactgattgcgggagaaggtttcgtttcaaccacatcaatgtaatattttttattgttatatggaatcattatagtgcggccagttgttaaacatg |
109 |
Q |
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|||||||||||||||||||||||||| |||||||| | |||||| ||||||||||| |||||||||||||||||||||||||| || ||||||||||||| |
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| T |
23990986 |
attatactgattgcgggagaaggttttgtttcaactatatcaatataatattttttgttgttatatggaatcattatagtgcgtccggttgttaaacatg |
23990887 |
T |
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| Q |
110 |
agtaactcctcaatgaagtttctaacctgcaaatcataaaagggaaaaagaaagatatta |
169 |
Q |
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| T |
23990886 |
agtaactcctcaatgaagtttctaacctgcaaatgatcaaggggaagaaaaaagatatta |
23990827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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