View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14304_low_26 (Length: 254)
Name: NF14304_low_26
Description: NF14304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14304_low_26 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 15594237 - 15594473
Alignment:
| Q |
18 |
aatttctcatcttcagcacgatattcctcggcttcttgaatcannnnnnnaatttcatatgctgacaacctttctttgtcattggttattgtgatctcgt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15594237 |
aatttctcatcttcagcacgatattcctcggcttcttgaatcatttttttaatttcatatgctgacaacctttctttgtcattggttattgtgatctcgt |
15594336 |
T |
|
| Q |
118 |
ttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgatagcaaagcatctttcaaaggtctggccacggggacccgaagt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
15594337 |
ttgtattgccagtggatgtttccttcacagaaacagtcaggatagcattttcatcgatagcaaagcatccttcaaaggtctggccacggggacccgaagt |
15594436 |
T |
|
| Q |
218 |
gcaagaaagagtcaacataccaagaaaattattgtca |
254 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||| |
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| T |
15594437 |
gcaagaaagagtcaacataccaagcaaattattgtca |
15594473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 185
Target Start/End: Complemental strand, 4679455 - 4679353
Alignment:
| Q |
83 |
caacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgatagcaaag |
182 |
Q |
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|||||||||||| ||||||||||| ||||||| ||| ||||| || || || |||| || |||||||||| | | | |||||| |||| ||||||||| |
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| T |
4679455 |
caacctttctttttcattggttatggtgatcttgttcgtatttcctgtagacatttctttagcagaaacagttagggtgccatttgcatctatagcaaag |
4679356 |
T |
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| Q |
183 |
cat |
185 |
Q |
| |
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||| |
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| T |
4679355 |
cat |
4679353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 84 - 175
Target Start/End: Complemental strand, 8586609 - 8586518
Alignment:
| Q |
84 |
aacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgat |
175 |
Q |
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||||||||||||||||||||||| || || |||||||||||||||| |||| |||||||| |||||||||| | |||||||||||||||||| |
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| T |
8586609 |
aacctttctttgtcattggttatcgttatttcgtttgtattgccagaggatatttccttcgcagaaacagttaggataccattttcatcgat |
8586518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 8615914 - 8616071
Alignment:
| Q |
18 |
aatttctcatcttcagcacgatattcctcggcttcttgaatcannnnnnnaatttcatatgctgacaacctttctttgtcattggttattgtgatctcgt |
117 |
Q |
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||||| ||||||||||| || || ||||| ||||||||||||| |||||||| || || ||||||||||||||||||||||| || || || | |
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| T |
8615914 |
aatttttcatcttcagcgcggtactcctctgcttcttgaatcagttttttaatttcatcagccgataacctttctttgtcattggttatcgttatttcat |
8616013 |
T |
|
| Q |
118 |
ttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgat |
175 |
Q |
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||||||||||||| ||| |||||||| |||| ||||| | ||||||||| || ||||| |
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| T |
8616014 |
ttgtattgccagtagatttttccttcgcagatacagtaaggataccattatcgtcgat |
8616071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 80 - 211
Target Start/End: Original strand, 8666680 - 8666811
Alignment:
| Q |
80 |
tgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgatagca |
179 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||| ||||||| |||||| ||||| | ||| |||||||| ||||||||||||||| || | | |
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| T |
8666680 |
tgacaacctttctttgtcattggttatggtgatcatgttcatattgcctgtggatatttccctagcagtaacagtcaggataccattttcatcaattgaa |
8666779 |
T |
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| Q |
180 |
aagcatctttcaaaggtctggccacggggacc |
211 |
Q |
| |
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|||||| || |||| ||||||||||||||| |
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| T |
8666780 |
aagcatacctccaagggctggccacggggacc |
8666811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 185
Target Start/End: Original strand, 17259498 - 17259599
Alignment:
| Q |
84 |
aacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgatagcaaagc |
183 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||| || || ||||||||||| | ||| | ||||||| |||| |||||||||| ||||||| |||||| |
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| T |
17259498 |
aaccttcctttgtcattggttattgtaatctcattcttactgccagtggatttgtccatagcagaaactgtcaaaataccattttgatcgatatcaaagc |
17259597 |
T |
|
| Q |
184 |
at |
185 |
Q |
| |
|
|| |
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|
| T |
17259598 |
at |
17259599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 211
Target Start/End: Complemental strand, 10495278 - 10495147
Alignment:
| Q |
80 |
tgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgatagca |
179 |
Q |
| |
|
||||||||||||||||||||| || || |||||| |||| ||||||| || ||| | ||||| ||| |||||||| ||| ||||||||||| || | | |
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| T |
10495278 |
tgacaacctttctttgtcattagtaatggtgatcgcgttcatattgcctgtagatatatccttagcagtaacagtcaggatgccattttcatcaatggaa |
10495179 |
T |
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| Q |
180 |
aagcatctttcaaaggtctggccacggggacc |
211 |
Q |
| |
|
|||||| || |||| ||||||||| ||||| |
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| T |
10495178 |
aagcatacctccaagggctggccacgaggacc |
10495147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 185
Target Start/End: Original strand, 3146528 - 3146633
Alignment:
| Q |
80 |
tgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgatagca |
179 |
Q |
| |
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|||||| |||||||||||||| |||| ||| ||||| || ||| | ||||||||| |||| || |||||||| | | ||| |||||||||| ||||| | |
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| T |
3146528 |
tgacaatctttctttgtcattagttactgtaatctcattcgtactaccagtggatttttcattagcagaaacaattaagatgccattttcattgatagta |
3146627 |
T |
|
| Q |
180 |
aagcat |
185 |
Q |
| |
|
|||||| |
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|
| T |
3146628 |
aagcat |
3146633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 177
Target Start/End: Original strand, 6788775 - 6788870
Alignment:
| Q |
82 |
acaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgatag |
177 |
Q |
| |
|
||||||||||||||| ||||||||| || ||||| || ||||||| |||||| |||| | ||||||| |||| |||||||||||||| |||| |
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| T |
6788775 |
acaacctttctttgtaattggttatggtaatctcattcatattgcccgtggatttttcagtagcagaaacggtcaaaataccattttcatcaatag |
6788870 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 185
Target Start/End: Original strand, 17267201 - 17267302
Alignment:
| Q |
84 |
aacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgatagcaaagc |
183 |
Q |
| |
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|||||| ||||||||||||||||||| ||||| || || | ||||||||| | ||| | ||||||| |||| |||||||||| ||||| | |||||| |
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| T |
17267201 |
aaccttcctttgtcattggttattgtaatctcattcttactaccagtggatttgtccatagcagaaactgtcaaaataccattttgatcgacatcaaagc |
17267300 |
T |
|
| Q |
184 |
at |
185 |
Q |
| |
|
|| |
|
|
| T |
17267301 |
at |
17267302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 174
Target Start/End: Complemental strand, 16658427 - 16658333
Alignment:
| Q |
80 |
tgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcga |
174 |
Q |
| |
|
|||||| |||||||| ||||||||||| ||||||| ||||||||| || || ||| |||||| |||||||||| | ||||||||||||||||| |
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| T |
16658427 |
tgacaatctttctttttcattggttatggtgatcttgtttgtatttcctgtagatacttccttagcagaaacagttaggataccattttcatcga |
16658333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 185
Target Start/End: Complemental strand, 16662898 - 16662797
Alignment:
| Q |
84 |
aacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgatagcaaagc |
183 |
Q |
| |
|
||||||||||||||||||||||| |||||||| || || | || |||||| |||||| | |||||||| | ||| || ||||||||||||||||||| |
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| T |
16662898 |
aacctttctttgtcattggttatcgtgatctcattcttacttccggtggatctttcctctgctgaaacagttaagatgccgttttcatcgatagcaaagc |
16662799 |
T |
|
| Q |
184 |
at |
185 |
Q |
| |
|
|| |
|
|
| T |
16662798 |
at |
16662797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 129
Target Start/End: Complemental strand, 12246316 - 12246267
Alignment:
| Q |
80 |
tgacaacctttctttgtcattggttattgtgatctcgtttgtattgccag |
129 |
Q |
| |
|
||||||||||||||||| ||| |||||||| ||||| |||| |||||||| |
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|
| T |
12246316 |
tgacaacctttctttgtaattagttattgtaatctcatttgaattgccag |
12246267 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 169
Target Start/End: Original strand, 30774517 - 30774602
Alignment:
| Q |
84 |
aacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttc |
169 |
Q |
| |
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|||||||||||||| |||||||| |||||||| || |||||||||||||| ||||| | |||||||| ||| ||||||||||| |
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| T |
30774517 |
aacctttctttgtcgttggttatcgtgatctcattcatattgccagtggatttttccatagcagaaacattcagtataccattttc |
30774602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 177
Target Start/End: Original strand, 35131763 - 35131817
Alignment:
| Q |
123 |
ttgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgatag |
177 |
Q |
| |
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||||| |||||| ||||||| |||||||||||| ||||||||||||||||||| |
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| T |
35131763 |
ttgccggtggatttttccttagcagaaacagtcaaaataccattttcatcgatag |
35131817 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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