View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14304_low_27 (Length: 250)
Name: NF14304_low_27
Description: NF14304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14304_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 2098163 - 2098388
Alignment:
| Q |
1 |
tttaaaattttaaaagaagaaattttacatacaaaagtcaaatatttcagtttttaacacattgattacataaatttttggnnnnnnn-tataatctaaa |
99 |
Q |
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| T |
2098163 |
tttaaaattttaaaagaagaaattttacatacaaaagtcaaatatttcaatttttaacacattgattacataaatttttggaaaaaaaatatcatctaaa |
2098262 |
T |
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| Q |
100 |
ggttataaagagtactccggaagcactcgttaatatttctcataaaaagtacggtcaactttaggttggtccattttacagacaaaaatccacaaaatgt |
199 |
Q |
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| T |
2098263 |
gattataaagagtactccagaggcactcgttaatatttctcataaaaaatacggtcaactttaggttggtccattttaccgacaaaaatccacaaaatgt |
2098362 |
T |
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| Q |
200 |
ccctatttggattttcgatccgatcc |
225 |
Q |
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|||||| ||||||||||||||||||| |
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| T |
2098363 |
ccctatctggattttcgatccgatcc |
2098388 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 79
Target Start/End: Original strand, 13197258 - 13197330
Alignment:
| Q |
7 |
attttaaaagaagaaatt-ttacatacaaaagtcaaatatttcagtttttaacacattgattacataaattttt |
79 |
Q |
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| T |
13197258 |
attttaaaataagaaattatttcata-aaaagtcaaatatttcaatttttaatgcattaattacataaattttt |
13197330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 37064543 - 37064471
Alignment:
| Q |
7 |
attttaaaagaagaaattttacatacaaaagtcaaatatttcagtttttaacacattgattacataaattttt |
79 |
Q |
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| T |
37064543 |
atttgaaaagaagaaatattttatacaaaagtcaaatattttgatttttaattcattgattacatatattttt |
37064471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 30910502 - 30910456
Alignment:
| Q |
33 |
aaaagtcaaatatttcagtttttaacacattgattacataaattttt |
79 |
Q |
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| T |
30910502 |
aaaagttaaatattttaatttttaacacattaattacataaattttt |
30910456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 137
Target Start/End: Original strand, 8208286 - 8208318
Alignment:
| Q |
105 |
taaagagtactccggaagcactcgttaatattt |
137 |
Q |
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| T |
8208286 |
taaagagtactccggaagcactcgttaacattt |
8208318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 53433285 - 53433213
Alignment:
| Q |
7 |
attttaaaagaagaaattttac-atacaaaagtcaaatatttcagtttttaacacattgattacataaatttt |
78 |
Q |
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|||||||||||||||||| | | ||| ||||||||||||||| | |||| | ||||||||||||||||||| |
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| T |
53433285 |
attttaaaagaagaaattattctataaaaaagtcaaatattttaattttcgatgcattgattacataaatttt |
53433213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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