View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14304_low_30 (Length: 216)
Name: NF14304_low_30
Description: NF14304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14304_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 37811588 - 37811772
Alignment:
| Q |
19 |
aggcattggtaagagcaaataaaatcatttacgcatctgatcttttcttcattcttttctttgttttacaaaatgannnnnnnnnagcttccaaacaaat |
118 |
Q |
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| T |
37811588 |
aggcattggtaagagcaaataaaatcatttacgcatctgatcttttcttcattcttttctttgttttacaaaatga-ttttttttagcttccaaacaaat |
37811686 |
T |
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| Q |
119 |
caagttgaaaagttaaccttg--nnnnnnnngaatttagaatgaggttatgagcttaacttggtaataaaggtgaaaagcctttgc |
202 |
Q |
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| T |
37811687 |
caagctgaaaagttaaccttgaaaaaaaaaagaatttagaatgaggttatgagcttaacttggtaataaaggtgaaaagcctttgc |
37811772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 24 - 202
Target Start/End: Complemental strand, 42060102 - 42059932
Alignment:
| Q |
24 |
ttggtaagagcaaataaaatcatttacgcatctgatcttttcttcattcttttctttgttttacaaaatgannnnnnnnnagcttccaaacaaatcaagt |
123 |
Q |
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| T |
42060102 |
ttggtaagagcaaataaaattatttatgcatctgaccttttcttcgttcttttctttgttttacaaaatgatttttttttagcttccaaacaaatcaagc |
42060003 |
T |
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| Q |
124 |
tgaaaagttaaccttgnnnnnnnngaatttagaatgaggttatgagcttaacttggtaataaaggtgaaaagcctttgc |
202 |
Q |
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| T |
42060002 |
tgaaaagttaaccttgaaaaaaaagaatttaga--------atgagcttaacttggaaataaaggtgaaaatcctttgc |
42059932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 71 - 202
Target Start/End: Complemental strand, 16825 - 16703
Alignment:
| Q |
71 |
tcttttctttgttttacaaaatgannnnnnnnnagcttccaaacaaatcaagttgaaaagttaaccttgnnnnnnnngaatttagaatgaggttatgagc |
170 |
Q |
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| T |
16825 |
tcttttctttgttttacaaaatgatttttttt-agcttccaaacaaatcaagctgaaaagttaaccttgaaaaaaaagaatttagaatgag--------c |
16735 |
T |
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| Q |
171 |
ttaacttggtaataaaggtgaaaagcctttgc |
202 |
Q |
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| T |
16734 |
ttaacttggtaataaaggtgaaaatcctttgc |
16703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 16865 - 16817
Alignment:
| Q |
19 |
aggcattggtaagagcaaataaaatcatttacgcatctgatcttttctt |
67 |
Q |
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| T |
16865 |
aggccttggtaagagcaaataaatttatttatgcatctgatcttttctt |
16817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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