View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14304_low_6 (Length: 459)
Name: NF14304_low_6
Description: NF14304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14304_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 6e-78; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 17 - 193
Target Start/End: Complemental strand, 53555732 - 53555561
Alignment:
| Q |
17 |
acaagtggtatttcaactcacttagatacatagcaaacaattaatacaagactaacacaacatgtatagaatgtaaaattgtgaatcctttcactagcta |
116 |
Q |
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| T |
53555732 |
acaagtggtatttcaactcacttagatacatagcaaacaattaatacaagactaacacaacatgtatagaatgtaaaattgtgaatcctttca----cta |
53555637 |
T |
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| Q |
117 |
gaacaaaacacctaataatttcgaccaaatcataagcaacactccttctttatccaagttaggaaccatattcatga |
193 |
Q |
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| T |
53555636 |
gaac-aaacacctaaaaatttcgaccaaatcataagcaacactccttctttatccaagttaggaaccatattcatga |
53555561 |
T |
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Target: chr4; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 191 - 448
Target Start/End: Complemental strand, 53555509 - 53555255
Alignment:
| Q |
191 |
tgagagtgttgaatgtcatattaatgccaaccctttcttagttgtagaatcacgcctcaattactacttaatnnnnnnnn--tacatgtctttcaagtat |
288 |
Q |
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| T |
53555509 |
tgagagtgttgaatgccatattaatgccaaccctttcttagttgtagaatcacgcctca-ttactacttaataaaaaaaaaatacatgtctttcaagtat |
53555411 |
T |
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| Q |
289 |
tttcatgtatgtaacttttattatnnnnnnnnnnnnnnnnttgttaacatattctagtggtataacgtatcgtttatcgaagtatttgtaacatatcgca |
388 |
Q |
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| T |
53555410 |
ttacatgtatgtaacttttattataaaaataaataaaaaattgttaacatattttagtagtatatcgtatcgtttatccacgtatttgtatcatatcgca |
53555311 |
T |
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| Q |
389 |
ctcgctctatatatgcatgcggttttcatagacgtagattcaagttgtgatttgacctat |
448 |
Q |
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| T |
53555310 |
ctcgtac----tatgcatgcggttttcatagacgtagattcaagttgtgatttgacctat |
53555255 |
T |
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