View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14304_low_7 (Length: 446)
Name: NF14304_low_7
Description: NF14304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14304_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 292 - 425
Target Start/End: Complemental strand, 16081434 - 16081301
Alignment:
| Q |
292 |
aacatagaaatgcaaacacatttactcattacataaataaattggctttacttaatcatgacagaaattggaagaagaaaactccaaattgtatttcaaa |
391 |
Q |
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| T |
16081434 |
aacatagaaatgcaaacacagttactcattacataaataaattggctttacttaatgatgacagaaattggaaggagaaaactccaaattgtatttcaaa |
16081335 |
T |
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| Q |
392 |
cattgttgtacaagattggttaccgttttaagtt |
425 |
Q |
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| T |
16081334 |
cattgttgtacaagattggttaccgttttaagtt |
16081301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 16081553 - 16081447
Alignment:
| Q |
8 |
tctcactataattttgccaaactcacagtcaatccaatatataaatagagacatagttggtcgtatttcgtttaacatataaactaggcaatgatgctaa |
107 |
Q |
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| T |
16081553 |
tctcaccataattttgtcaaactcacggtcaatccaatatataaatagagacataattggttgtatttcgtttaacatataagctaggcagtgatgctaa |
16081454 |
T |
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| Q |
108 |
acatcac |
114 |
Q |
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| T |
16081453 |
acatcac |
16081447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 45368976 - 45368919
Alignment:
| Q |
100 |
gatgctaaacatcacgatagaaattgtagtgaatgcatcg-gagagctaattataatg |
156 |
Q |
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| T |
45368976 |
gatgctaaacatcacgatagaaattgtagcgaatgcatcgcgtgagctaattataatg |
45368919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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