View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14305_high_3 (Length: 383)
Name: NF14305_high_3
Description: NF14305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14305_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 6 - 349
Target Start/End: Original strand, 30523892 - 30524235
Alignment:
| Q |
6 |
atgcttttgatggcttcaggcatgaaggaacgaagaacaagtcttcttaggttagcatgataatttccttgatgaaagaaaattgcttgtttccctaaca |
105 |
Q |
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| T |
30523892 |
atgcttttgatggcttcaggcatgaaagaacgaagaacaagtcttcttaggttagcatgataatttccttgatgaaagaaaattgcttgtttccctaaca |
30523991 |
T |
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| Q |
106 |
tcctttctttgctagctggaaatgttggtttgaaaagttgagatttgtttcacacaaattttgctgcttctggacttgaaatcatcacacaaggacaacc |
205 |
Q |
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| T |
30523992 |
tcctttctttgctagctggaaatgttggtttgaaaagttgagatttgtttaacacaaattttgctgcttctggacttgaaatcatcacacaaggacaacc |
30524091 |
T |
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| Q |
206 |
taaaatgtgagacttgaacatagcaccatacctataattcaaaaacaaaatcaacaataataattagtataaatatcacttaatgagctaatctagtatg |
305 |
Q |
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| T |
30524092 |
taaaatgtgagacttgaacatagcaccatacctataattcaaaaacaaaatcaacaataataattagtatatatatcacttaatgagctaatctagtctg |
30524191 |
T |
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| Q |
306 |
taagtacaactcagatgataaatagttgcagggacatttgatat |
349 |
Q |
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| T |
30524192 |
taagtacaactcagatgataaatagttgcagggacatttgatat |
30524235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 13 - 239
Target Start/End: Complemental strand, 10423090 - 10422864
Alignment:
| Q |
13 |
tgatggcttcaggcatgaaggaacgaagaacaagtcttcttaggttagcatgataatttccttgatgaaagaaaattgcttgtttccctaacatcctttc |
112 |
Q |
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| T |
10423090 |
tgatggctaccggcatgaacgtgcgaagaacaagtcttcttaaattagcatgatactctccttgatgaaaaaagatagcttgttttcccaacatcctctc |
10422991 |
T |
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| Q |
113 |
tttgctagctggaaatgttggtttgaaaagttgagatttgtttcacacaaattttgctgcttctggacttgaaatcatcacacaaggacaacctaaaatg |
212 |
Q |
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||||||||| || |||||||| ||||||||||||| ||| || |||||||||||||||||| |||||||||||||||||||| ||||| || |||||| |
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| T |
10422990 |
tttgctagcagggaatgttggcttgaaaagttgagctttattcagcacaaattttgctgcttcaggacttgaaatcatcacacatggacatcccaaaatg |
10422891 |
T |
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| Q |
213 |
tgagacttgaacatagcaccataccta |
239 |
Q |
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| T |
10422890 |
tgagacttgaacatagaaccataccta |
10422864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 240
Target Start/End: Complemental strand, 13909866 - 13909794
Alignment:
| Q |
168 |
gctgcttctggacttgaaatcatcacacaaggacaacctaaaatgtgagacttgaacatagcaccatacctat |
240 |
Q |
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| T |
13909866 |
gctgcctcaggacttgatatcatcacacaaggacaacctagtatgtgtgtcttgaatatatctccatacctat |
13909794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 349
Target Start/End: Complemental strand, 40094735 - 40094691
Alignment:
| Q |
305 |
gtaagtacaactcagatgataaatagttgcagggacatttgatat |
349 |
Q |
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| T |
40094735 |
gtaagtacaactcagatggtaaaattttgcagggacatttgatat |
40094691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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