View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14305_high_6 (Length: 281)

Name: NF14305_high_6
Description: NF14305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14305_high_6
NF14305_high_6
[»] chr4 (3 HSPs)
chr4 (1-263)||(34755349-34755611)
chr4 (1-263)||(34763325-34763587)
chr4 (1-263)||(34780525-34780787)


Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 34755349 - 34755611
Alignment:
Q  1 tctacgatttctccattttttcttttgttcacaatctcttgtcgtttcttgataaccttttcaatgataggatcatacttattgaaaatctcgtcaattc 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34755349 tctatgatttctccattttttcttttgttcacaatctcttgtcgtttcttgataaccttttcaatgataggatcatacttattgaaaatctcgtcaattc 34755448  T
Q  101 tcttctcatagtttccaaacttaaacttgttcaatggccatatgaagtttgtaacactatattctccaaagatctcaagaacatcgcgagcaatatctct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34755449 tcttctcatagtttccaaacttaaacttgttcaatggccatatgaagtttgtaacactatattctccaaagatctcaagaacatcgcgagcaatatctct 34755548  T
Q  201 aacctcttcagcctcacccaacatcatcgtagagattgtgctgtttgtccacttgagaagctc 263  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34755549 aacctcttcggcctcacccaacatcatcgtagagattgtgctgtttgtccacttgagaagctc 34755611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 34763325 - 34763587
Alignment:
Q  1 tctacgatttctccattttttcttttgttcacaatctcttgtcgtttcttgataaccttttcaatgataggatcatacttattgaaaatctcgtcaattc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||    
T  34763325 tctacgatttctccattttttcttttgttcacaatctcttgtcgtttcttgataaccttttcaatgataggatcatacttattgaaaatctcctcagttc 34763424  T
Q  101 tcttctcatagtttccaaacttaaacttgttcaatggccatatgaagtttgtaacactatattctccaaagatctcaagaacatcgcgagcaatatctct 200  Q
    |||| ||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  34763425 tcttatcatagtttccaaacttaaacttgttcaaaggccaaataaagtttgtaacactatattctccaaagatcttaagaacatcacgagcaatatctct 34763524  T
Q  201 aacctcttcagcctcacccaacatcatcgtagagattgtgctgtttgtccacttgagaagctc 263  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34763525 aacctcttcggcctcacccaacatcatggtagagattgtgctgtttgtccacttgagaagctc 34763587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 34780787 - 34780525
Alignment:
Q  1 tctacgatttctccattttttcttttgttcacaatctcttgtcgtttcttgataaccttttcaatgataggatcatacttattgaaaatctcgtcaattc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||    
T  34780787 tctacgatttctccattttttcttttgttcacaatctcttgtcgtttcttgataaccttttcaatgataggatcatacttattgaaaatctcctcagttc 34780688  T
Q  101 tcttctcatagtttccaaacttaaacttgttcaatggccatatgaagtttgtaacactatattctccaaagatctcaagaacatcgcgagcaatatctct 200  Q
    |||| ||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  34780687 tcttatcatagtttccaaacttaaacttgttcaaaggccaaataaagtttgtaacactatattctccaaagatcttaagaacatcacgagcaatatctct 34780588  T
Q  201 aacctcttcagcctcacccaacatcatcgtagagattgtgctgtttgtccacttgagaagctc 263  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34780587 aacctcttcggcctcacccaacatcatggtagagattgtgctgtttgtccacttgagaagctc 34780525  T

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