View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14305_high_7 (Length: 270)
Name: NF14305_high_7
Description: NF14305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14305_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 25997508 - 25997253
Alignment:
| Q |
1 |
agtaatcttggattgcaagaaagacatatggaacagccaagaactgtttgagctggttgaagaatattttgaaaacagtttgcagacattggatttctgc |
100 |
Q |
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| T |
25997508 |
agtaatcttggattgcaagaaagacatatggaacagccaagatctgtttgagctggttgaagaatattttgaaaacagtttgcaaacattggatttctgc |
25997409 |
T |
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| Q |
101 |
actgcattggagaagtgcttgaaaagagctagggatagccaattgcttattcttgttgcgattcaacggttcgaggaagaatctgaatcaggagacaaat |
200 |
Q |
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| T |
25997408 |
actgcattggagaagtgcttgaaaagagctagggatagccaattgcttattcttgttgcgattcaacggttcgaggaagaatctgaatcaggagacaaat |
25997309 |
T |
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| Q |
201 |
gctatgcaagaacattgcaagaattgaagaattttaaaacagctggtgatcctttc |
256 |
Q |
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| T |
25997308 |
gctatgcaagaacattgcaagaattgaagaattttaaaacagctggtgatcctttc |
25997253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 151
Target Start/End: Complemental strand, 12558454 - 12558305
Alignment:
| Q |
2 |
gtaatcttggattgcaagaaagacatatggaacagccaagaactgtttgagctggttgaagaatattttgaaaacagtttgcagacattggatttctgca |
101 |
Q |
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|||||||| || || |||||||| |||||||| || ||||||||||||||||| ||||| || || ||||| || || ||| |||| | |||||||||| |
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| T |
12558454 |
gtaatcttagactgtaagaaagatatatggaagagtcaagaactgtttgagcttgttgaggagtactttgataatagcttgaagactctagatttctgca |
12558355 |
T |
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| Q |
102 |
ctgcattggagaagtgcttgaaaagagctagggatagccaattgcttatt |
151 |
Q |
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||| || |||||||| |||| ||||| |||||||| |||||||||||| |
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| T |
12558354 |
atgctttagagaagtgtctgaagagagccagggatagtcaattgcttatt |
12558305 |
T |
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