View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14305_low_1 (Length: 540)
Name: NF14305_low_1
Description: NF14305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14305_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 96 - 523
Target Start/End: Complemental strand, 33246715 - 33246280
Alignment:
| Q |
96 |
cgatatgaatttgatgatagtccaaatttgttagcgaaaaaagcgcatcgtgggtatagtcagtcctttcactacgtgttacaccaa--------taaat |
187 |
Q |
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| T |
33246715 |
cgatatgattttgatgatagtccaaatttgttagcgaaaaaagcgcatcgtgggtatagtcagtcctttcactacgtgttgcaccaaatcaacaataaat |
33246616 |
T |
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| Q |
188 |
ccaccaccattcacaacaacaacgtattttcaggaacaacaatgatgtcgtcgtgtaattcttctccgtgtgcggcgtgcaagattcagcgtcgaaaatg |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
33246615 |
ccaccaccattcacaacaacaacgtattttcaggaacaacaatgatgtcgtcgtgtaattcttctccgtgtgcagcgtgcaagattcagcgtcgaaaatg |
33246516 |
T |
|
| Q |
288 |
cactaaggaatgcatttttgcaccctattttccgccggaaaatcctcaaaagtttacctacgtccacaaagtcttcggtgctagcaacgtggcaaagtta |
387 |
Q |
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| T |
33246515 |
cactaaggaatgcatttttgcaccctattttccgccggaaaatcctcaaaagtttacctacgtccacaaagtcttcggtgctagcaacgtggcaaagtta |
33246416 |
T |
|
| Q |
388 |
ctcaacgaggttgatgcttctcaacgtgaagatgctgttaagtctttagcttatgaagcagaagcgcgtttgagagatcctgtttatggttgtgttggtc |
487 |
Q |
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| T |
33246415 |
ctcaacgaggttgatgcttctcaacgtgaagatgctgttaagtctttagcttatgaagcagaagcgcgtttgagagatcctgtttatggttgtgttggtc |
33246316 |
T |
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| Q |
488 |
ttatttcacatcttcagaataagcttaagaatttgc |
523 |
Q |
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| T |
33246315 |
ttatttcacatcttcagaataagcttaagaatttgc |
33246280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 486
Target Start/End: Original strand, 34675394 - 34675444
Alignment:
| Q |
436 |
gcttatgaagcagaagcgcgtttgagagatcctgtttatggttgtgttggt |
486 |
Q |
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| T |
34675394 |
gcttatgaagccgaggcacgtgtgagagatcctgtttatggttgtgttggt |
34675444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 253 - 512
Target Start/End: Original strand, 6650105 - 6650364
Alignment:
| Q |
253 |
ccgtgtgcggcgtgcaagattcagcgtcgaaaatgcactaaggaatgcatttttgcaccctattttccgccggaaaatcctcaaaagtttacctacgtcc |
352 |
Q |
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|||||||||||||| ||| ||| || |||||||||||| | || || |||||||||| |||||||| ||||| |||||||||| ||| | || || | |
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| T |
6650105 |
ccgtgtgcggcgtgtaagtttctccggcgaaaatgcactcaagagtgtgtttttgcaccgtattttccaccggacaatcctcaaagatttgcatatgtac |
6650204 |
T |
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| Q |
353 |
acaaagtcttcggtgctagcaacgtggcaaagttactcaacgaggttgatgcttctcaacgtgaagatgctgttaagtctttagcttatgaagcagaagc |
452 |
Q |
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||||||| || || ||||| |||||||||||| | | |||||| || | || | || ||||| || || |||||||| || |||||||| || || || |
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| T |
6650205 |
acaaagtttttggagctagtaacgtggcaaagctgttaaacgagcttaacgcgacgcagcgtgatgacgcggttaagtcgttggcttatgaggccgaggc |
6650304 |
T |
|
| Q |
453 |
gcgtttgagagatcctgtttatggttgtgttggtcttatttcacatcttcagaataagct |
512 |
Q |
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||| |||| ||||| |||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
6650305 |
gcggctgagggatccagtttatggttgtgttggtcttatttcacttcttcagcataagct |
6650364 |
T |
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