View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14305_low_5 (Length: 330)

Name: NF14305_low_5
Description: NF14305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14305_low_5
NF14305_low_5
[»] chr1 (11 HSPs)
chr1 (16-318)||(40642903-40643205)
chr1 (202-303)||(3887411-3887513)
chr1 (154-230)||(33693096-33693172)
chr1 (152-229)||(13344836-13344913)
chr1 (152-230)||(4347036-4347114)
chr1 (181-267)||(47978376-47978462)
chr1 (145-230)||(40352453-40352538)
chr1 (150-188)||(47899389-47899427)
chr1 (207-280)||(8318955-8319027)
chr1 (158-227)||(35961465-35961534)
chr1 (181-229)||(5930823-5930871)
[»] chr3 (17 HSPs)
chr3 (152-303)||(32112014-32112166)
chr3 (152-281)||(25129452-25129581)
chr3 (204-301)||(44489381-44489479)
chr3 (150-230)||(42644300-42644381)
chr3 (151-230)||(31766159-31766238)
chr3 (205-303)||(40339246-40339345)
chr3 (202-303)||(51151566-51151667)
chr3 (202-303)||(51167886-51167987)
chr3 (151-248)||(30958112-30958210)
chr3 (151-248)||(30973924-30974022)
chr3 (152-230)||(53567970-53568048)
chr3 (150-230)||(31013112-31013192)
chr3 (152-188)||(35264324-35264360)
chr3 (233-284)||(32245255-32245306)
chr3 (181-230)||(7012678-7012727)
chr3 (181-229)||(10852727-10852775)
chr3 (150-230)||(41115273-41115353)
[»] chr2 (16 HSPs)
chr2 (181-303)||(10918576-10918699)
chr2 (152-284)||(36307005-36307137)
chr2 (152-282)||(4007116-4007245)
chr2 (152-223)||(17140660-17140731)
chr2 (150-225)||(42650354-42650429)
chr2 (218-284)||(21234446-21234512)
chr2 (152-230)||(12110921-12110999)
chr2 (209-303)||(43717344-43717440)
chr2 (208-306)||(4908807-4908906)
chr2 (208-278)||(411770-411840)
chr2 (272-306)||(12037078-12037112)
chr2 (150-227)||(1763270-1763347)
chr2 (181-230)||(23359942-23359991)
chr2 (152-189)||(37745811-37745848)
chr2 (202-265)||(7629928-7629992)
chr2 (202-230)||(15220824-15220852)
[»] chr4 (21 HSPs)
chr4 (160-303)||(29778975-29779119)
chr4 (192-303)||(32817410-32817518)
chr4 (205-303)||(7206302-7206401)
chr4 (154-222)||(24131580-24131647)
chr4 (168-301)||(11302419-11302551)
chr4 (151-230)||(38740286-38740365)
chr4 (154-227)||(50945390-50945463)
chr4 (152-222)||(22250328-22250398)
chr4 (181-230)||(22699765-22699814)
chr4 (181-230)||(22980716-22980765)
chr4 (181-230)||(22994303-22994352)
chr4 (207-268)||(47514174-47514235)
chr4 (206-278)||(46508004-46508075)
chr4 (181-281)||(47733543-47733643)
chr4 (202-248)||(17898091-17898137)
chr4 (202-283)||(8849490-8849569)
chr4 (192-276)||(46382819-46382904)
chr4 (152-300)||(48575408-48575556)
chr4 (152-188)||(20911812-20911848)
chr4 (202-230)||(36150627-36150655)
chr4 (152-248)||(43868212-43868308)
[»] chr7 (7 HSPs)
chr7 (149-284)||(35105198-35105333)
chr7 (212-302)||(38453371-38453462)
chr7 (150-230)||(40491672-40491752)
chr7 (151-302)||(26984394-26984544)
chr7 (202-284)||(41792400-41792482)
chr7 (150-226)||(42481801-42481877)
chr7 (202-230)||(29829332-29829360)
[»] chr8 (11 HSPs)
chr8 (158-284)||(38516290-38516416)
chr8 (204-303)||(24776360-24776460)
chr8 (150-227)||(10368062-10368139)
chr8 (167-227)||(10552909-10552969)
chr8 (205-256)||(16009230-16009281)
chr8 (179-230)||(19649232-19649283)
chr8 (204-286)||(24183786-24183868)
chr8 (166-230)||(1373085-1373149)
chr8 (152-188)||(5893348-5893384)
chr8 (152-188)||(18355762-18355798)
chr8 (150-230)||(36779437-36779517)
[»] chr5 (14 HSPs)
chr5 (202-284)||(32421895-32421977)
chr5 (205-303)||(19563785-19563884)
chr5 (152-284)||(23647664-23647796)
chr5 (152-284)||(23810777-23810909)
chr5 (176-284)||(5969953-5970065)
chr5 (209-284)||(16572935-16573010)
chr5 (167-273)||(5465398-5465504)
chr5 (150-228)||(14299422-14299500)
chr5 (202-303)||(41606271-41606373)
chr5 (150-284)||(6988160-6988294)
chr5 (181-230)||(22811078-22811127)
chr5 (152-281)||(40910903-40911032)
chr5 (162-259)||(43438587-43438684)
chr5 (152-276)||(6095244-6095368)
[»] chr6 (6 HSPs)
chr6 (152-228)||(1499996-1500072)
chr6 (216-279)||(34800792-34800855)
chr6 (150-188)||(46199-46237)
chr6 (239-279)||(34776863-34776903)
chr6 (152-227)||(20660386-20660460)
chr6 (236-303)||(34805256-34805324)
[»] scaffold0172 (1 HSPs)
scaffold0172 (152-230)||(15242-15320)
[»] scaffold0015 (1 HSPs)
scaffold0015 (151-230)||(65538-65617)
[»] scaffold0036 (1 HSPs)
scaffold0036 (152-188)||(864-900)


Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 16 - 318
Target Start/End: Complemental strand, 40643205 - 40642903
Alignment:
Q  16 cacatgtcacatgcaagtaaattttgtcggagaatttccaaaatataactttagaaatatgcaatggttaaatgcagttaatgaagtgtaattgacacag 115  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  40643205 cacatgtcacatgcgagtaaatgttgtcggagaatttccaaaatataactttggaaatatgcaatggttaaatgcacttaatgaagtgtaattgacacag 40643106  T
Q  116 tctacaatttggtctactggttttgatgttgagcagaattgattttgagtgaattgattctctaaaattgatttcggataagagcaagttgaatgtaaag 215  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  40643105 tctacaatttggtctagtggttttgatgttgagcagaattgattttgagtgaattgattctgtaaaattgattttggataagagcaagttgaatgtaaag 40643006  T
Q  216 tgatttatgtttggacgtatttgtgtaaaagtggatttgacaatgaatttaagactaaaatcaattgtataatcaaaagctacaaattttaaaagtgaat 315  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||    
T  40643005 tgatttatgtttggacgtatttgtgtaaaagtagatttgacaatgaatttaagactaaaatcaattgtataatcaaaacctacaaattgtaaaagtggat 40642906  T
Q  316 ttt 318  Q
    |||    
T  40642905 ttt 40642903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 202 - 303
Target Start/End: Original strand, 3887411 - 3887513
Alignment:
Q  202 agttgaatgtaaagtgatttatgtttggacgtatttgtgtaaaagtggatttgacaatgaatttaagactaaaatcaattgtataa-tcaaaagctacaa 300  Q
    |||| |||||||| || |||||||||||| |||||| ||||||||||||||| | ||| |||||||| ||||||||||||||| ||  ||||||||||||    
T  3887411 agttcaatgtaaaatgttttatgtttggatgtatttatgtaaaagtggatttaataataaatttaaggctaaaatcaattgtagaagccaaaagctacaa 3887510  T
Q  301 att 303  Q
    |||    
T  3887511 att 3887513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 230
Target Start/End: Complemental strand, 33693172 - 33693096
Alignment:
Q  154 ttgattttgagtgaattgattctctaaaattgatttcggataagagcaagttgaatgtaaagtgatttatgtttgga 230  Q
    |||||||| |||||||||||||| |||||||| || ||| ||| ||| ||||||| |||||||||||||||||||||    
T  33693172 ttgattttaagtgaattgattctataaaattgtttccggttaaaagcgagttgaacgtaaagtgatttatgtttgga 33693096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 229
Target Start/End: Complemental strand, 13344913 - 13344836
Alignment:
Q  152 aattgattttgagtgaattgattctctaaaattgatttcggataagagcaagttgaatgtaaagtgatttatgtttgg 229  Q
    |||||||||||| |||||||||| | || ||||||||| || ||| ||  ||||||| ||||||||||||||||||||    
T  13344913 aattgattttgattgaattgattttgtagaattgattttggttaaaagtgagttgaacgtaaagtgatttatgtttgg 13344836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 230
Target Start/End: Complemental strand, 4347114 - 4347036
Alignment:
Q  152 aattgattttgagtgaattgattctctaaaattgatttcggataagagcaagttgaatgtaaagtgatttatgtttgga 230  Q
    |||||||||||   ||||||||| | || ||||||||| || ||| ||  |||||||||||||||||||||||||||||    
T  4347114 aattgattttggtagaattgattttgtagaattgattttggttaaaagtgagttgaatgtaaagtgatttatgtttgga 4347036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 267
Target Start/End: Original strand, 47978376 - 47978462
Alignment:
Q  181 aattgatttcggataagagcaagttgaatgtaaagtgatttatgtttggacgtatttgtgtaaaagtggatttgacaatgaatttaa 267  Q
    ||||||||| || ||| ||  ||||||||||||||||||||||| ||||| |||||| ||| |||||| |||| ||| | |||||||    
T  47978376 aattgattttgggtaaaagtgagttgaatgtaaagtgatttatggttggatgtatttatgtcaaagtgaatttaacactaaatttaa 47978462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 230
Target Start/End: Complemental strand, 40352538 - 40352453
Alignment:
Q  145 tgagcagaattgattttgagtgaattgattctctaaaattgatttcggataagagcaagttgaatgtaaagtgatttatgtttgga 230  Q
    |||| ||||||||||||||  ||||||||| | |  ||||||||| || ||| ||  |||| ||||||||||||||||||||||||    
T  40352538 tgaggagaattgattttgatagaattgattttgtggaattgattttggttaaaagtgagtttaatgtaaagtgatttatgtttgga 40352453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 188
Target Start/End: Complemental strand, 47899427 - 47899389
Alignment:
Q  150 agaattgattttgagtgaattgattctctaaaattgatt 188  Q
    ||||||||||||||||||||||||| | |||||||||||    
T  47899427 agaattgattttgagtgaattgattttgtaaaattgatt 47899389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 280
Target Start/End: Complemental strand, 8319027 - 8318955
Alignment:
Q  207 aatgtaaagtgatttatgtttggacgtatttgtgtaaaagtggatttgacaatgaatttaagactaaaatcaat 280  Q
    |||||||| ||||||||||||| |  ||||| ||||||||||||||| ||||  ||| |||| |||||||||||    
T  8319027 aatgtaaaatgatttatgtttgaaaatattt-tgtaaaagtggatttaacaagaaatgtaaggctaaaatcaat 8318955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 227
Target Start/End: Complemental strand, 35961534 - 35961465
Alignment:
Q  158 ttttgagtgaattgattctctaaaattgatttcggataagagcaagttgaatgtaaagtgatttatgttt 227  Q
    |||||||| |||||||||| |||||| |||| ||| ||| ||  ||||||| ||||| ||||||||||||    
T  35961534 ttttgagtaaattgattctgtaaaatagattacggctaaaagtgagttgaaggtaaaatgatttatgttt 35961465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 5930871 - 5930823
Alignment:
Q  181 aattgatttcggataagagcaagttgaatgtaaagtgatttatgtttgg 229  Q
    ||||||||| || ||| || || ||||||||||||||||||||||||||    
T  5930871 aattgattttggttaaaagtaaattgaatgtaaagtgatttatgtttgg 5930823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 152 - 303
Target Start/End: Complemental strand, 32112166 - 32112014
Alignment:
Q  152 aattgattttgagtgaattgattctctaaaattgatttcggataagagcaagttgaatgtaaagtgatttatgtttggacgtatttgtgtaaaagtggat 251  Q
    ||||||||||||||||||||||| | |||||||||||  |||||| |   ||||||||| ||||| |||||||||||||  ||||| |||||||||||||    
T  32112166 aattgattttgagtgaattgattatgtaaaattgattatggataaaaatgagttgaatgaaaagtaatttatgtttggatttatttatgtaaaagtggat 32112067  T
Q  252 ttgacaatgaatttaagactaaaatcaattgtataa-tcaaaagctacaaatt 303  Q
    || |||||||||||||| |||||||||||| || ||  |||||||||||||||    
T  32112066 ttaacaatgaatttaagtctaaaatcaattctaaaagccaaaagctacaaatt 32112014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 152 - 281
Target Start/End: Original strand, 25129452 - 25129581
Alignment:
Q  152 aattgattttgagtgaattgattctctaaaattgatttcggataagagcaagttgaatgtaaagtgatttatgtttggacgtatttgtgtaaaagtggat 251  Q
    ||||||| |||| |||||||||  | |||||||||||  |||||| ||  |||||||||||| |||||||||||||||| |||||| |||||||||||||    
T  25129452 aattgatcttgaatgaattgatgttgtaaaattgattcaggataaaagtgagttgaatgtaacgtgatttatgtttggatgtatttatgtaaaagtggat 25129551  T
Q  252 ttgacaatgaatttaagactaaaatcaatt 281  Q
    || ||||| ||||  || ||||||||||||    
T  25129552 ttaacaataaattggaggctaaaatcaatt 25129581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 301
Target Start/End: Original strand, 44489381 - 44489479
Alignment:
Q  204 ttgaatgtaaagtgatttatgtttggacgtatttgtgtaaaagtggatttgacaatgaatttaagactaaaatcaattgta-taatcaaaagctacaaa 301  Q
    ||||||||| |||| ||||||||||||  |||||  ||||||||| |||  |||||||||| |||||||||||||||||||  || |||||||||||||    
T  44489381 ttgaatgtagagtggtttatgtttggatatatttaggtaaaagtgaattgaacaatgaattcaagactaaaatcaattgtagaaaccaaaagctacaaa 44489479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 150 - 230
Target Start/End: Complemental strand, 42644381 - 42644300
Alignment:
Q  150 agaattgattttgagtgaattgattctctaaaa-ttgatttcggataagagcaagttgaatgtaaagtgatttatgtttgga 230  Q
    ||||||||||||||||||||||||| | ||||| |||||||  | ||| ||  |||||||||||||||||||||||||||||    
T  42644381 agaattgattttgagtgaattgattttataaaaattgattttagttaaaagtgagttgaatgtaaagtgatttatgtttgga 42644300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 230
Target Start/End: Original strand, 31766159 - 31766238
Alignment:
Q  151 gaattgattttgagtgaattgattctctaaaattgatttcggataagagcaagttgaatgtaaagtgatttatgtttgga 230  Q
    ||||||||||||| |||||||||| | ||||||| |||| |||||| ||  |||||||  ||||||||||||||||||||    
T  31766159 gaattgattttgaatgaattgattttgtaaaattaattttggataaaagtgagttgaagttaaagtgatttatgtttgga 31766238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 303
Target Start/End: Complemental strand, 40339345 - 40339246
Alignment:
Q  205 tgaatgtaaagtgatttatgtttggacgtatttgtgtaaaagtggatttgacaatgaatttaagactaaaatcaattgtataatc-aaaagctacaaatt 303  Q
    ||||||||||||| ||||||||||||  |||||  ||||||||| |||  ||||| |||| ||| ||||||||||||||| || | ||||||||||||||    
T  40339345 tgaatgtaaagtggtttatgtttggatatatttaggtaaaagtgaattgaacaataaattcaaggctaaaatcaattgtagaagcaaaaagctacaaatt 40339246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 202 - 303
Target Start/End: Complemental strand, 51151667 - 51151566
Alignment:
Q  202 agttgaatgtaaagtgatttatgtttggacgtatttgtgtaaaagtggatttgacaatgaatttaagactaaaatcaattgtataa-tcaaaagctacaa 300  Q
    |||||| | |||| ||||||||||||||| |||||| |||||||| ||||||  |||| ||| |||| ||||||||||||||| || ||||||||| |||    
T  51151667 agttgattttaaaatgatttatgtttgga-gtatttatgtaaaagcggatttcgcaataaatgtaaggctaaaatcaattgtagaagtcaaaagctgcaa 51151569  T
Q  301 att 303  Q
    |||    
T  51151568 att 51151566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 202 - 303
Target Start/End: Complemental strand, 51167987 - 51167886
Alignment:
Q  202 agttgaatgtaaagtgatttatgtttggacgtatttgtgtaaaagtggatttgacaatgaatttaagactaaaatcaattgtataa-tcaaaagctacaa 300  Q
    |||||| | |||| ||||||||||||||| |||||| |||||||| ||||||  |||| ||| |||| ||||||||||||||| || ||||||||| |||    
T  51167987 agttgattttaaaatgatttatgtttgga-gtatttatgtaaaagcggatttcgcaataaatgtaaggctaaaatcaattgtagaagtcaaaagctgcaa 51167889  T
Q  301 att 303  Q
    |||    
T  51167888 att 51167886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 248
Target Start/End: Complemental strand, 30958210 - 30958112
Alignment:
Q  151 gaattgattttgagtgaattgattctctaaaattgatttcggataagagcaagttgaatgtaaag-tgatttatgtttggacgtatttgtgtaaaagtg 248  Q
    ||||||||||||| |||||||||| | |||||||||||| || |||  |  |||||||||||||| | |||||||||||||  ||||  ||||||||||    
T  30958210 gaattgattttgaatgaattgattttgtaaaattgattttggctaaatgtgagttgaatgtaaagtttatttatgtttggatatattcatgtaaaagtg 30958112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 248
Target Start/End: Complemental strand, 30974022 - 30973924
Alignment:
Q  151 gaattgattttgagtgaattgattctctaaaattgatttcggataagagcaagttgaatgtaaag-tgatttatgtttggacgtatttgtgtaaaagtg 248  Q
    ||||||||||||| |||||||||| | |||||||||||| || |||  |  |||||||||||||| | |||||||||||||  ||||  ||||||||||    
T  30974022 gaattgattttgaatgaattgattttgtaaaattgattttggctaaatgtgagttgaatgtaaagtttatttatgtttggatatattcatgtaaaagtg 30973924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 230
Target Start/End: Complemental strand, 53568048 - 53567970
Alignment:
Q  152 aattgattttgagtgaattgattctctaaaattgatttcggataagagcaagttgaatgtaaagtgatttatgtttgga 230  Q
    ||||||||||||||||||||||| |  ||||||||||| |  ||| ||  ||||||||| ||||| |||||||||||||    
T  53568048 aattgattttgagtgaattgattttacaaaattgattttgattaaaagtgagttgaatgaaaagtaatttatgtttgga 53567970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 230
Target Start/End: Complemental strand, 31013192 - 31013112
Alignment:
Q  150 agaattgattttgagtgaattgattctctaaaattgatttcggataagagcaagttgaatgtaaagtgatttatgtttgga 230  Q
    ||||||||||||||||||||||||||  ||||||||||| ||  ||| ||  ||||| |  ||||||||||| ||||||||    
T  31013192 agaattgattttgagtgaattgattccataaaattgattccgactaaaagtgagttgtagataaagtgatttgtgtttgga 31013112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 35264324 - 35264360
Alignment:
Q  152 aattgattttgagtgaattgattctctaaaattgatt 188  Q
    ||||||||||||||||||||||||| |||||||||||    
T  35264324 aattgattttgagtgaattgattctgtaaaattgatt 35264360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 32245255 - 32245306
Alignment:
Q  233 tatttgtgtaaaagtggatttgacaatgaatttaagactaaaatcaattgta 284  Q
    ||||||| |||||||||||||  |||| ||||||| ||||||||||||||||    
T  32245255 tatttgtataaaagtggatttatcaataaatttaaaactaaaatcaattgta 32245306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 7012727 - 7012678
Alignment:
Q  181 aattgatttcggataagagcaagttgaatgtaaagtgatttatgtttgga 230  Q
    ||||||||| || ||| ||  |||||||||||||||||||||||||||||    
T  7012727 aattgattttggttaaaagtgagttgaatgtaaagtgatttatgtttgga 7012678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 10852727 - 10852775
Alignment:
Q  181 aattgatttcggataagagcaagttgaatgtaaagtgatttatgtttgg 229  Q
    ||||||||| || ||| ||  ||||||||||||||||||||||||||||    
T  10852727 aattgattttggttaaaagtgagttgaatgtaaagtgatttatgtttgg 10852775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 230
Target Start/End: Original strand, 41115273 - 41115353
Alignment:
Q  150 agaattgattttgagtgaattgattctctaaaattgatttcggataagagcaagttgaatgtaaagtgatttatgtttgga 230  Q
    |||||||||| ||| |||||||||| | || ||||||||| || ||| |   ||||||||||||| || ||||||||||||    
T  41115273 agaattgattatgaatgaattgattttgtataattgattttggctaacaatgagttgaatgtaaaatggtttatgtttgga 41115353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 181 - 303
Target Start/End: Complemental strand, 10918699 - 10918576
Alignment:
Q  181 aattgatttcggataagagcaagttgaatgtaaagtgatttatgtttggacgtatttgtgtaaaagtggatttgacaatgaatttaagactaaaatcaat 280  Q
    ||||||||| |||||| ||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||| || |    
T  10918699 aattgattttggataaaagtgagttgaatgtaaagtgatttatgtttggatgtatttgtgtaaaagtggatttgacaataaatttaaggctaaaaccatt 10918600  T
Q  281 tgtataa-tcaaaagctacaaatt 303  Q
    |||| ||  |||||||||||||||    
T  10918599 tgtagaagccaaaagctacaaatt 10918576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 152 - 284
Target Start/End: Complemental strand, 36307137 - 36307005
Alignment:
Q  152 aattgattttgagtgaattgattctctaaaattgatttcggataagagcaagttgaatgtaaagtgatttatgtttggacgtatttgtgtaaaagtggat 251  Q
    ||||||| ||||||||||||||| | |||||||||||  |||||| ||  ||||||| ||||||| ||| ||||||| | |||||| | |||||||||||    
T  36307137 aattgatcttgagtgaattgattatgtaaaattgattatggataaaagtgagttgaacgtaaagtaattgatgtttgtatgtatttatataaaagtggat 36307038  T
Q  252 ttgacaatgaatttaagactaaaatcaattgta 284  Q
    || ||||| |||||||| |||||||||||||||    
T  36307037 ttaacaataaatttaaggctaaaatcaattgta 36307005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 152 - 282
Target Start/End: Original strand, 4007116 - 4007245
Alignment:
Q  152 aattgattttgagtgaattgattctctaaaattgatttcggataagagcaagttgaatgtaaagtgatttatgtttggacgtatttgtgtaaaagtggat 251  Q
    |||||||||| |||| ||||||| | |||||||||||  |||||| ||  ||||||||| ||||| ||||||||||| | |||||| |||||||||||||    
T  4007116 aattgattttaagtggattgattttgtaaaattgattatggataaaagtgagttgaatgaaaagtaatttatgtttg-atgtatttatgtaaaagtggat 4007214  T
Q  252 ttgacaatgaatttaagactaaaatcaattg 282  Q
    ||  ||||||||||||| |||||||||||||    
T  4007215 ttatcaatgaatttaaggctaaaatcaattg 4007245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 223
Target Start/End: Complemental strand, 17140731 - 17140660
Alignment:
Q  152 aattgattttgagtgaattgattctctaaaattgatttcggataagagcaagttgaatgtaaagtgatttat 223  Q
    |||| ||||||||||||| |||||| |||||||||||| |||||| ||  | ||||||||||||||||||||    
T  17140731 aattaattttgagtgaatagattctataaaattgattttggataaaagtgaattgaatgtaaagtgatttat 17140660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 225
Target Start/End: Complemental strand, 42650429 - 42650354
Alignment:
Q  150 agaattgattttgagtgaattgattctctaaaattgatttcggataagagcaagttgaatgtaaagtgatttatgt 225  Q
    ||||||||||||||||||||||||| | |||| ||||||  ||| || |  |||||||||||||||||||||||||    
T  42650429 agaattgattttgagtgaattgattatgtaaatttgattgtggacaaaactaagttgaatgtaaagtgatttatgt 42650354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 218 - 284
Target Start/End: Original strand, 21234446 - 21234512
Alignment:
Q  218 atttatgtttggacgtatttgtgtaaaagtggatttgacaatgaatttaagactaaaatcaattgta 284  Q
    ||||||||||||| |||||| ||| ||||||||||||||||| || |||||  ||||||||||||||    
T  21234446 atttatgtttggatgtatttatgtgaaagtggatttgacaataaacttaaggttaaaatcaattgta 21234512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 230
Target Start/End: Complemental strand, 12110999 - 12110921
Alignment:
Q  152 aattgattttgagtgaattgattctctaaaattgatttcggataagagcaagttgaatgtaaagtgatttatgtttgga 230  Q
    ||||||||||||  ||||||||| | | |||||||||| || ||| ||  |||||||| ||||||||||||||||||||    
T  12110999 aattgattttgatagaattgattttgtcaaattgattttggttaaaagtgagttgaatataaagtgatttatgtttgga 12110921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 303
Target Start/End: Complemental strand, 43717440 - 43717344
Alignment:
Q  209 tgtaaagtgatttatgtttggacgtatttgtgt-aaaagtggatttgacaatgaatttaagactaaaatcaattgtataatcaa-aagctacaaatt 303  Q
    ||||||||||||||||||||||  ||||||||| |||| || |||  ||||| |||| ||  ||||||||||||||| || ||| ||||||||||||    
T  43717440 tgtaaagtgatttatgtttggatatatttgtgtaaaaaatgaattgaacaataaattcaatgctaaaatcaattgtaaaagcaagaagctacaaatt 43717344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 306
Target Start/End: Complemental strand, 4908906 - 4908807
Alignment:
Q  208 atgtaaagtgatttatgtttggacgtatttgtgtaaaagtggatttgacaatgaatttaagact-aaaatcaattgtataatcaaaagctacaaatttta 306  Q
    |||||||||||||||||||||||   |||  ||| ||||||||||  ||||| || ||||| || ||||||||||||| || | ||| ||||||||||||    
T  4908906 atgtaaagtgatttatgtttggatacattcatgttaaagtggattgaacaataaagttaaggctgaaaatcaattgtagaagccaaatctacaaatttta 4908807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 278
Target Start/End: Complemental strand, 411840 - 411770
Alignment:
Q  208 atgtaaagtgatttatgtttggacgtatttgtgtaaaagtggatttgacaatgaatttaagactaaaatca 278  Q
    ||||||| ||||||||||||||| || ||| | ||||||| ||||| |||||  ||||||||||| |||||    
T  411840 atgtaaaatgatttatgtttggatgtgtttatataaaagttgatttaacaatatatttaagactataatca 411770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 306
Target Start/End: Complemental strand, 12037112 - 12037078
Alignment:
Q  272 aaaatcaattgtataatcaaaagctacaaatttta 306  Q
    ||||||||||||| |||||||||||||||||||||    
T  12037112 aaaatcaattgtagaatcaaaagctacaaatttta 12037078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 1763347 - 1763270
Alignment:
Q  150 agaattgattttgagtgaattgattctctaaaattgatttcggataagagcaagttgaatgtaaagtgatttatgttt 227  Q
    ||||||||||||||   |||||||| | |||||||||||| || ||| |   |||||||| |||||||||||||||||    
T  1763347 agaattgattttgataaaattgattttgtaaaattgattttggttaaaattgagttgaatttaaagtgatttatgttt 1763270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 23359942 - 23359991
Alignment:
Q  181 aattgatttcggataagagcaagttgaatgtaaagtgatttatgtttgga 230  Q
    ||||||||| || ||| ||  |||||||||||||||||||||||||||||    
T  23359942 aattgattttggttaaaagtgagttgaatgtaaagtgatttatgtttgga 23359991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 189
Target Start/End: Original strand, 37745811 - 37745848
Alignment:
Q  152 aattgattttgagtgaattgattctctaaaattgattt 189  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  37745811 aattgattttgagtgaattgattatgtaaaattgattt 37745848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 265
Target Start/End: Complemental strand, 7629992 - 7629928
Alignment:
Q  202 agttgaatgtaaagtga-tttatgtttggacgtatttgtgtaaaagtggatttgacaatgaattt 265  Q
    ||||||||||||||||| ||||||||||||  |||||  ||||||||| |||  |||||||||||    
T  7629992 agttgaatgtaaagtgattttatgtttggatatattttcgtaaaagtgaattgaacaatgaattt 7629928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 230
Target Start/End: Original strand, 15220824 - 15220852
Alignment:
Q  202 agttgaatgtaaagtgatttatgtttgga 230  Q
    |||||||||||||||||||||||||||||    
T  15220824 agttgaatgtaaagtgatttatgtttgga 15220852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 160 - 303
Target Start/End: Original strand, 29778975 - 29779119
Alignment:
Q  160 ttgagtgaattgattctctaaaattgatttcggataagagcaagttgaatgtaaagtgatttatgtttggacgtatttgtgtaaaagtggatttgacaat 259  Q
    ||||| ||||||||| | |||||||||||  |||||| ||  |||||||| ||||||||||||| |||||| ||||||||||||||||||||| ||||||    
T  29778975 ttgagggaattgattgtgtaaaattgattatggataaaagtgagttgaatataaagtgatttatctttggatgtatttgtgtaaaagtggattcgacaat 29779074  T
Q  260 gaatttaagactaaaatcaattgtataa-tcaaaagctacaaatt 303  Q
     | |||||| ||||||||||||| | || | ||||||||||||||    
T  29779075 aactttaagcctaaaatcaattgcagaagtgaaaagctacaaatt 29779119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 192 - 303
Target Start/End: Original strand, 32817410 - 32817518
Alignment:
Q  192 gataagagcaagttgaatgtaaagtgatttatgtttggacgtatttgtgtaaaagtggatttgacaatgaatttaagactaaaatcaattgtataa-tca 290  Q
    |||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||  |||  || ||||| ||||||||||||||| || | |    
T  32817410 gataagagtaaattgaatgtaaagtgatttatgtttggatgtatttgtgtaaaagtggattt--caa--aaattaaggctaaaatcaattgtagaagtaa 32817505  T
Q  291 aaagctacaaatt 303  Q
    |||||||||||||    
T  32817506 aaagctacaaatt 32817518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 205 - 303
Target Start/End: Complemental strand, 7206401 - 7206302
Alignment:
Q  205 tgaatgtaaagtgatttatgtttggacgtatttgtgtaaaagtggatttgacaatgaatttaagactaaaatcaattgtataa-tcaaaagctacaaatt 303  Q
    ||||||||||||||||||| |||||| |||||| ||||||| | ||||| ||||| |||||||| ||||||||||||||| ||  |||||||||||||||    
T  7206401 tgaatgtaaagtgatttatatttggatgtatttatgtaaaactagatttaacaataaatttaaggctaaaatcaattgtagaagccaaaagctacaaatt 7206302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 222
Target Start/End: Original strand, 24131580 - 24131647
Alignment:
Q  154 ttgattttgagtgaattgattctctaaaattgatttcggataagagcaagttgaatgtaaagtgattta 222  Q
    ||||||||||||||| ||||| | |||| |||||||||||||||||| ||||| |||||||||||||||    
T  24131580 ttgattttgagtgaactgatt-tgtaaagttgatttcggataagagcgagttggatgtaaagtgattta 24131647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 301
Target Start/End: Complemental strand, 11302551 - 11302419
Alignment:
Q  168 attgattctctaaaattgatttcggataagagcaagttgaatgtaaagtgatttatgtttggacgtatttgtgtaaaagtggatttgacaatgaatttaa 267  Q
    |||| |||| |||||||||||  | |||| ||  || |||||||||| ||||||  ||||||| ||||||||||||||||| ||||||| || |||||||    
T  11302551 attgtttctgtaaaattgattatgaataaaagtgagatgaatgtaaaatgattt--gtttggatgtatttgtgtaaaagtgaatttgacgataaatttaa 11302454  T
Q  268 gactaaaatcaattgtataa-tcaaaagctacaaa 301  Q
      |||||||||| |||| ||  |||||||||||||    
T  11302453 tgctaaaatcaagtgtagaagccaaaagctacaaa 11302419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 230
Target Start/End: Original strand, 38740286 - 38740365
Alignment:
Q  151 gaattgattttgagtgaattgattctctaaaattgatttcggataagagcaagttgaatgtaaagtgatttatgtttgga 230  Q
    ||||||||||||| |||||||||| | |||||||||||| |||||| ||  |||||||  | ||||||||||||||||||    
T  38740286 gaattgattttgaatgaattgattttgtaaaattgattttggataaaagtgagttgaagttgaagtgatttatgtttgga 38740365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 50945390 - 50945463
Alignment:
Q  154 ttgattttgagtgaattgattctctaaaattgatttcggataagagcaagttgaatgtaaagtgatttatgttt 227  Q
    ||||||||||||||||||||| | ||||||||||| |||||||     |||| |||||||||||||||||||||    
T  50945390 ttgattttgagtgaattgattttataaaattgattccggataaatttgagttaaatgtaaagtgatttatgttt 50945463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 22250398 - 22250328
Alignment:
Q  152 aattgattttgagtgaattgattctctaaaattgatttcggataagagcaagttgaatgtaaagtgattta 222  Q
    ||||||||||||| ||||||||||| |||||||||||  |  ||| ||| |||||||||| ||||||||||    
T  22250398 aattgattttgagggaattgattctgtaaaattgattatgactaaaagcgagttgaatgtgaagtgattta 22250328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 22699814 - 22699765
Alignment:
Q  181 aattgatttcggataagagcaagttgaatgtaaagtgatttatgtttgga 230  Q
    ||||||||| || ||| || ||||||||||||||||||||||||||||||    
T  22699814 aattgattttggttaaaagtaagttgaatgtaaagtgatttatgtttgga 22699765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 22980716 - 22980765
Alignment:
Q  181 aattgatttcggataagagcaagttgaatgtaaagtgatttatgtttgga 230  Q
    ||||||||| || ||| || ||||||||||||||||||||||||||||||    
T  22980716 aattgattttggttaaaagtaagttgaatgtaaagtgatttatgtttgga 22980765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 22994303 - 22994352
Alignment:
Q  181 aattgatttcggataagagcaagttgaatgtaaagtgatttatgtttgga 230  Q
    ||||||||| || ||| || ||||||||||||||||||||||||||||||    
T  22994303 aattgattttggttaaaagtaagttgaatgtaaagtgatttatgtttgga 22994352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 268
Target Start/End: Original strand, 47514174 - 47514235
Alignment:
Q  207 aatgtaaagtgatttatgtttggacgtatttgtgtaaaagtggatttgacaatgaatttaag 268  Q
    ||||||||||||| |||||||||| || ||| | ||||||||||||| ||||| ||||||||    
T  47514174 aatgtaaagtgatctatgtttggatgtttttctataaaagtggatttaacaataaatttaag 47514235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 278
Target Start/End: Original strand, 46508004 - 46508075
Alignment:
Q  206 gaatgtaaagtgatttatgtttggacgtatttgtgtaaaagtggatttgacaatgaatttaagactaaaatca 278  Q
    |||| |||||||||||||||||| |||| |||||  |||||||| ||| ||||| ||||| ||||||||||||    
T  46508004 gaatataaagtgatttatgtttgaacgtgtttgtaaaaaagtgggtttaacaataaattt-agactaaaatca 46508075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 281
Target Start/End: Original strand, 47733543 - 47733643
Alignment:
Q  181 aattgatttcggataagagcaagttgaatgtaaagtgatttatgtttggacgtatttgtgtaaaagtggatttgacaatgaatttaagactaaaatcaat 280  Q
    ||||||||  |||||| ||  ||||||||||||| |||| ||| ||| || |||||| ||||||| | ||||| | ||| |||||||| |||||||||||    
T  47733543 aattgattatggataaaagttagttgaatgtaaaatgatatatattttgatgtatttatgtaaaattagatttaataataaatttaaggctaaaatcaat 47733642  T
Q  281 t 281  Q
    |    
T  47733643 t 47733643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 248
Target Start/End: Original strand, 17898091 - 17898137
Alignment:
Q  202 agttgaatgtaaagtgatttatgtttggacgtatttgtgtaaaagtg 248  Q
    |||||||||||||||||||||||||||||  |||||  |||||||||    
T  17898091 agttgaatgtaaagtgatttatgtttggatatatttaggtaaaagtg 17898137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 283
Target Start/End: Original strand, 8849490 - 8849569
Alignment:
Q  202 agttgaatgtaaagtgatttatgtttggacgtatttgtgtaaaagtggatttgacaatgaatttaagactaaaatcaattgt 283  Q
    |||||||||||||||| ||||||||| ||  ||||| ||||||| ||||||| ||||| ||||||||   ||||||||||||    
T  8849490 agttgaatgtaaagtg-tttatgtttagat-tatttatgtaaaaatggatttaacaataaatttaagggcaaaatcaattgt 8849569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 276
Target Start/End: Complemental strand, 46382904 - 46382819
Alignment:
Q  192 gataagagcaagttgaatgtaaagtgatttatgtttggacgtatttgtg-taaaagtggatttgacaatgaatttaagactaaaat 276  Q
    ||||| || |||||||||||||| |||||||||||| || ||||   || |||||||| |||| ||||| ||||||| ||||||||    
T  46382904 gataaaagtaagttgaatgtaaaatgatttatgtttagatgtataaatgttaaaagtgaattttacaataaatttaaaactaaaat 46382819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 300
Target Start/End: Complemental strand, 48575556 - 48575408
Alignment:
Q  152 aattgattttgagtgaattgattctctaaaattgatttcggataagagcaagttgaatgtaaagtgatttatgtttggacgtatttgtgtaaaagtggat 251  Q
    |||| ||||||| |||||||||| | ||||||||||||  ||||| |   ||||||||||||| || ||||| |||| |  | ||| ||||||| || ||    
T  48575556 aattaattttgaatgaattgattttgtaaaattgatttttgataaaaatgagttgaatgtaaaatggtttatttttgaatatgttt-tgtaaaactgaat 48575458  T
Q  252 ttgacaatgaatttaagactaaaatcaattgtataa-tcaaaagctacaa 300  Q
    || ||||| ||||| | | |||||||||||||| || | |||||||||||    
T  48575457 ttaacaataaattttaaattaaaatcaattgtagaagttaaaagctacaa 48575408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 20911812 - 20911848
Alignment:
Q  152 aattgattttgagtgaattgattctctaaaattgatt 188  Q
    ||||||||||||||||||||||| | |||||||||||    
T  20911812 aattgattttgagtgaattgattatgtaaaattgatt 20911848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 230
Target Start/End: Complemental strand, 36150655 - 36150627
Alignment:
Q  202 agttgaatgtaaagtgatttatgtttgga 230  Q
    |||||||||||||||||||||||||||||    
T  36150655 agttgaatgtaaagtgatttatgtttgga 36150627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 248
Target Start/End: Complemental strand, 43868308 - 43868212
Alignment:
Q  152 aattgattttgagtgaattgattctctaaaattgatttcggataagagcaagttgaatgtaaagtgatttatgtttggacgtatttgtgtaaaagtg 248  Q
    |||||||||||| |||||||||| | ||||||| |||   | ||| || |||||||| |||||||||||| | ||||||   |||| ||||||||||    
T  43868308 aattgattttgaatgaattgattttgtaaaattaattctagttaaaagtaagttgaaagtaaagtgatttgtctttggatacatttatgtaaaagtg 43868212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 149 - 284
Target Start/End: Complemental strand, 35105333 - 35105198
Alignment:
Q  149 cagaattgattttgagtgaattgattctctaaaattgatttcggataagagcaagttgaatgtaaagtgatttatgtttggacgtatttgtgtaaaagtg 248  Q
    |||||||||||||||||||||||||| | |||||||||||  |||| | ||    ||||||| ||||||||||||||||||| || ||| ||||||||||    
T  35105333 cagaattgattttgagtgaattgattttttaaaattgattctggatgaaagtggattgaatgaaaagtgatttatgtttggatgtttttatgtaaaagtg 35105234  T
Q  249 gatttgacaatgaatttaagactaaaatcaattgta 284  Q
    |||||  | ||||||||||| ||||| |||||||||    
T  35105233 gatttatcgatgaatttaaggctaaagtcaattgta 35105198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 212 - 302
Target Start/End: Complemental strand, 38453462 - 38453371
Alignment:
Q  212 aaagtgatttatgtttggacgtatttgtgtaaaagtggatttgacaatgaatttaagactaaaatcaattgtataa-tcaaaagctacaaat 302  Q
    ||||||||||||||||  | |||||| |||||||||||||||  ||||||||||||| ||||||||||||||| || ||||||| |||||||    
T  38453462 aaagtgatttatgttttaatgtatttatgtaaaagtggatttatcaatgaatttaaggctaaaatcaattgtagaagtcaaaagttacaaat 38453371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 230
Target Start/End: Complemental strand, 40491752 - 40491672
Alignment:
Q  150 agaattgattttgagtgaattgattctctaaaattgatttcggataagagcaagttgaatgtaaagtgatttatgtttgga 230  Q
    ||||||||||||||||||||||||||| |||||||||||| |  ||| ||  ||||||| |||||||||||||| ||||||    
T  40491752 agaattgattttgagtgaattgattctgtaaaattgattttgactaaaagtgagttgaaggtaaagtgatttatttttgga 40491672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 302
Target Start/End: Original strand, 26984394 - 26984544
Alignment:
Q  151 gaattgattttgagtgaattgattctctaaaattgatttcggataagagcaagttgaatgtaaagtgatttatgtttggacgtatttgtgtaaaagtgga 250  Q
    ||||||||||||| |||||||||| | ||||| |||||| |||||| |   ||||||||||||| ||||||| ||||| | || |||   ||||||||||    
T  26984394 gaattgattttgaatgaattgattatgtaaaactgattttggataa-aaagagttgaatgtaaattgatttacgtttgaatgtttttacataaaagtgga 26984492  T
Q  251 tttgacaatgaatttaagactaaaatcaattgtataatcaaaagctacaaat 302  Q
    ||| ||||| ||||||||  |||||| |||  || || | ||||||||||||    
T  26984493 tttaacaataaatttaagggtaaaattaatcataaaagccaaagctacaaat 26984544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 284
Target Start/End: Complemental strand, 41792482 - 41792400
Alignment:
Q  202 agttgaatgtaaagtgatttatgtttggacgtatttgtgtaaaagtggatttgacaatgaatttaagactaaaatcaattgta 284  Q
    |||||||||||||||||||| |||||||| | ||||  |||||| | ||||| ||||| |||||||   ||||||||||||||    
T  41792482 agttgaatgtaaagtgatttgtgtttggatgaatttaagtaaaaatagatttaacaataaatttaaagttaaaatcaattgta 41792400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 226
Target Start/End: Original strand, 42481801 - 42481877
Alignment:
Q  150 agaattgattttgagtgaattgattctctaaaattgatttcggataagagcaagttgaatgtaaagtgatttatgtt 226  Q
    |||||||||||| |||||||||||| | |||||||||||  | | || ||  ||||||||||||| |||||||||||    
T  42481801 agaattgattttaagtgaattgattatgtaaaattgattctgaaaaaaagtgagttgaatgtaaaatgatttatgtt 42481877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 230
Target Start/End: Original strand, 29829332 - 29829360
Alignment:
Q  202 agttgaatgtaaagtgatttatgtttgga 230  Q
    |||||||||||||||||||||||||||||    
T  29829332 agttgaatgtaaagtgatttatgtttgga 29829360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 158 - 284
Target Start/End: Complemental strand, 38516416 - 38516290
Alignment:
Q  158 ttttgagtgaattgattctctaaaattgatttcggataagagcaagttgaatgtaaagtgatttatgtttggacgtatttgtgtaaaagtggatttgaca 257  Q
    ||||||||||||||||| | || |||||||||  ||||| ||  ||||||||||||||||||||||||||||| |||||| ||||||| | | ||| |||    
T  38516416 ttttgagtgaattgattttgtagaattgattttcgataatagtgagttgaatgtaaagtgatttatgtttggatgtatttatgtaaaaatagttttaaca 38516317  T
Q  258 atgaatttaagactaaaatcaattgta 284  Q
    ||||||||||| |||| ||| ||||||    
T  38516316 atgaatttaaggctaagatcgattgta 38516290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 303
Target Start/End: Complemental strand, 24776460 - 24776360
Alignment:
Q  204 ttgaatgtaaagtgatttatgtttggacgtatttgtgtaaaagtggatttgacaatgaatttaagactaaaatcaattgtataa-tcaaaagctacaaat 302  Q
    ||||||||||||||||||||| ||| | | |||| |||||||| |||||| ||||| || |||||  |||||||||||||| || ||||||| |||||||    
T  24776460 ttgaatgtaaagtgatttatgcttgaaggcatttatgtaaaaggggatttaacaataaaattaagggtaaaatcaattgtagaagtcaaaagttacaaat 24776361  T
Q  303 t 303  Q
    |    
T  24776360 t 24776360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 10368139 - 10368062
Alignment:
Q  150 agaattgattttgagtgaattgattctctaaaattgatttcggataagagcaagttgaatgtaaagtgatttatgttt 227  Q
    |||||||||||||||||||||| || | |||||||||||| |  ||| ||  ||||||| |||||||||||| |||||    
T  10368139 agaattgattttgagtgaattgtttttgtaaaattgattttgagtaaaagtgagttgaaggtaaagtgatttgtgttt 10368062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 10552909 - 10552969
Alignment:
Q  167 aattgattctctaaaattgatttcggataagagcaagttgaatgtaaagtgatttatgttt 227  Q
    ||||||| ||||||||||||||| || ||| ||  ||||||||||||| ||||||||||||    
T  10552909 aattgatactctaaaattgattttggttaaaagtgagttgaatgtaaattgatttatgttt 10552969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 205 - 256
Target Start/End: Complemental strand, 16009281 - 16009230
Alignment:
Q  205 tgaatgtaaagtgatttatgtttggacgtatttgtgtaaaagtggatttgac 256  Q
    |||| ||||||||||||| |||| || ||||||||||||||||| |||||||    
T  16009281 tgaacgtaaagtgatttacgtttagatgtatttgtgtaaaagtgaatttgac 16009230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 19649283 - 19649232
Alignment:
Q  179 aaaattgatttcggataagagcaagttgaatgtaaagtgatttatgtttgga 230  Q
    ||||||||||| || ||| ||  |||||||||||||||||||||||||||||    
T  19649283 aaaattgattttggttaaaagtgagttgaatgtaaagtgatttatgtttgga 19649232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 286
Target Start/End: Complemental strand, 24183868 - 24183786
Alignment:
Q  204 ttgaatgtaaagtgatttatgtttggacgtatttgtgtaaaagtggatttgacaatgaatttaagactaaaatcaattgtata 286  Q
    ||||||| ||| |||||||| |||| | |||| | |||||||||||||||  |||| |||||||  |||||||||||| ||||    
T  24183868 ttgaatgaaaaatgatttatatttgaatgtatatatgtaaaagtggatttatcaataaatttaaagctaaaatcaattatata 24183786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 1373149 - 1373085
Alignment:
Q  166 gaattgattctctaaaattgatttcggataagagcaagttgaatgtaaagtgatttatgtttgga 230  Q
    ||||||||| | |||||||||||| |||||| ||  |||||||  | ||||||||||||||||||    
T  1373149 gaattgattttgtaaaattgattttggataaaagtgagttgaagttgaagtgatttatgtttgga 1373085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 5893384 - 5893348
Alignment:
Q  152 aattgattttgagtgaattgattctctaaaattgatt 188  Q
    |||||||||||||| |||||||||| |||||||||||    
T  5893384 aattgattttgagttaattgattctgtaaaattgatt 5893348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 18355762 - 18355798
Alignment:
Q  152 aattgattttgagtgaattgattctctaaaattgatt 188  Q
    ||||||||||||||||||||||| | |||||||||||    
T  18355762 aattgattttgagtgaattgattttgtaaaattgatt 18355798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 230
Target Start/End: Complemental strand, 36779517 - 36779437
Alignment:
Q  150 agaattgattttgagtgaattgattctctaaaattgatttcggataagagcaagttgaatgtaaagtgatttatgtttgga 230  Q
    ||||||||||||||   |||||||| | || ||||||||| |  ||| ||  ||||||||||||||| |||||||||||||    
T  36779517 agaattgattttgatataattgattttgtagaattgattttgattaaaagtgagttgaatgtaaagtaatttatgtttgga 36779437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 202 - 284
Target Start/End: Original strand, 32421895 - 32421977
Alignment:
Q  202 agttgaatgtaaagtgatttatgtttggacgtatttgtgtaaaagtggatttgacaatgaatttaagactaaaatcaattgta 284  Q
    ||||||||| ||||||||||||||||||| |||||| |||||||||| ||||  ||||||||||||| |||||||||||||||    
T  32421895 agttgaatgaaaagtgatttatgtttggatgtatttatgtaaaagtgaatttatcaatgaatttaaggctaaaatcaattgta 32421977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 205 - 303
Target Start/End: Original strand, 19563785 - 19563884
Alignment:
Q  205 tgaatgtaaagtgatttatgtttggacgtatttgtgtaaaagtggatttgacaatgaatttaagactaaaatcaattgtata-atcaaaagctacaaatt 303  Q
    |||||||||| ||||||||||||| | |||||| | |||||||  |||| |||||||||||||||| ||||||||||| | | | |||||||||||||||    
T  19563785 tgaatgtaaaatgatttatgtttgaatgtatttatataaaagtatatttaacaatgaatttaagacaaaaatcaattgaagagaccaaaagctacaaatt 19563884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 284
Target Start/End: Complemental strand, 23647796 - 23647664
Alignment:
Q  152 aattgattttgagtgaattgattctctaaaattgatttcggataagagcaagttgaatgtaaagtgatttatgtttggacgtatttgtgtaaaagtggat 251  Q
    ||||||||||| ||||||||||||  ||||||| |||| |||| | ||    || |||||||| ||||||||||||||| ||||||  ||||||||||||    
T  23647796 aattgattttgtgtgaattgattcagtaaaattaattttggatgaaagtggattaaatgtaaaatgatttatgtttggatgtatttacgtaaaagtggat 23647697  T
Q  252 ttgacaatgaatttaagactaaaatcaattgta 284  Q
    ||  | || ||||||||  || |||||||||||    
T  23647696 ttagccataaatttaaggttataatcaattgta 23647664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 284
Target Start/End: Original strand, 23810777 - 23810909
Alignment:
Q  152 aattgattttgagtgaattgattctctaaaattgatttcggataagagcaagttgaatgtaaagtgatttatgtttggacgtatttgtgtaaaagtggat 251  Q
    ||||||||||| ||||||||||||  ||||||| |||| |||| | ||    || |||||||| ||||||||||||||| ||||||  ||||||||||||    
T  23810777 aattgattttgtgtgaattgattcagtaaaattaattttggatgaaagtggattaaatgtaaaatgatttatgtttggatgtatttacgtaaaagtggat 23810876  T
Q  252 ttgacaatgaatttaagactaaaatcaattgta 284  Q
    ||  | || ||||||||  || |||||||||||    
T  23810877 ttagccataaatttaaggttataatcaattgta 23810909  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 284
Target Start/End: Original strand, 5969953 - 5970065
Alignment:
Q  176 tctaaaattgatttcggataagagcaagttgaatgtaaagtgatttatgtttg----gacgtatttgtgtaaaagtggatttgacaatgaatttaagact 271  Q
    |||| ||||||||| |||||  ||  |||||||||||||||||||||||||||     | |||||||||||| ||||||||| || || |||||||| ||    
T  5969953 tctagaattgattttggatataagtgagttgaatgtaaagtgatttatgtttgtttaaatgtatttgtgtaatagtggatttaaccataaatttaaggct 5970052  T
Q  272 aaaatcaattgta 284  Q
    |||||||| ||||    
T  5970053 aaaatcaactgta 5970065  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 284
Target Start/End: Original strand, 16572935 - 16573010
Alignment:
Q  209 tgtaaagtgatttatgtttggacgtatttgtgtaaaagtggatttgacaatgaatttaagactaaaatcaattgta 284  Q
    ||||||||||||||||||| || |||||| |||||| || ||||| | ||| ||||||||  ||||||||||||||    
T  16572935 tgtaaagtgatttatgtttagatgtatttatgtaaacgtagatttaataataaatttaaggttaaaatcaattgta 16573010  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 273
Target Start/End: Original strand, 5465398 - 5465504
Alignment:
Q  167 aattgattctctaaaattgatttcggataagagcaagttgaatgtaaagtgatttatgtttggacgtatttgtgtaaaagtggatttgacaatgaattta 266  Q
    |||||||| | ||||||||||||  ||||| ||  | ||||||| ||| |||||||||||| || |||||| ||||||| | |||||  |||||||||||    
T  5465398 aattgattttgtaaaattgattttagataaaagtgaattgaatgaaaaatgatttatgtttagatgtatttatgtaaaaattgatttatcaatgaattta 5465497  T
Q  267 agactaa 273  Q
    || ||||    
T  5465498 aggctaa 5465504  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 228
Target Start/End: Complemental strand, 14299500 - 14299422
Alignment:
Q  150 agaattgattttgagtgaattgattctctaaaattgatttcggataagagcaagttgaatgtaaagtgatttatgtttg 228  Q
    |||||| |||||||||||||||||| | |||||||||||   ||||| ||  ||||||| |||||||||||| ||||||    
T  14299500 agaatttattttgagtgaattgattgtgtaaaattgattctagataaaagtgagttgaaggtaaagtgatttgtgtttg 14299422  T

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Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 303
Target Start/End: Complemental strand, 41606373 - 41606271
Alignment:
Q  202 agttgaatgtaaagtgatttatgtttggacgtatttgtgtaaaagtggatttgacaatgaatttaagactaaaatcaattgta-taatcaaaagctacaa 300  Q
    ||||||||||||||| |||| ||||||||  ||||| |||||||||| |  |||| || ||||||||  |||||| |||||||  |||||||||||| ||    
T  41606373 agttgaatgtaaagttatttgtgtttggatttatttatgtaaaagtgaacctgaccataaatttaaggttaaaattaattgtagaaatcaaaagctataa 41606274  T
Q  301 att 303  Q
    |||    
T  41606273 att 41606271  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 284
Target Start/End: Complemental strand, 6988294 - 6988160
Alignment:
Q  150 agaattgattttgagtgaattgattctctaaaattgatttcggataagagcaagttgaatgtaaagtgatttatgtttggacgtatttgtgtaaaagtgg 249  Q
    ||||||||||  |||  |||||||| | ||||||||||||    ||| || ||||||||| |||| |||||||||||| || |||||| | ||||||||     
T  6988294 agaattgattcagaggaaattgattttgtaaaattgattttaattaaaagtaagttgaatttaaaatgatttatgtttagatgtatttatctaaaagtga 6988195  T
Q  250 atttgacaatgaatttaagactaaaatcaattgta 284  Q
    |||| ||  | | ||||||  ||||||||||||||    
T  6988194 atttaacggtaattttaaggataaaatcaattgta 6988160  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 22811127 - 22811078
Alignment:
Q  181 aattgatttcggataagagcaagttgaatgtaaagtgatttatgtttgga 230  Q
    ||||||||| || ||| ||  |||||||||||||||||||||||||||||    
T  22811127 aattgattttggttaaaagtgagttgaatgtaaagtgatttatgtttgga 22811078  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 281
Target Start/End: Original strand, 40910903 - 40911032
Alignment:
Q  152 aattgattttgagtgaattgattctctaaaattgatttcggataagagcaagttgaatgtaaagtgatttatgtttggacgtatttgtgtaaaagtggat 251  Q
    |||||||||| | |||| ||||| | ||||||| |||| | |||| ||  |||||||||||| ||| ||||||| || | |||||| |||| ||||  ||    
T  40910903 aattgattttaaatgaagtgattttgtaaaatttattttgaataaaagtgagttgaatgtaatgtgttttatgtatgaatgtatttatgtagaagtaaat 40911002  T
Q  252 ttgacaatgaatttaagactaaaatcaatt 281  Q
    || ||||| ||||| || |||| |||||||    
T  40911003 ttaacaataaatttcaggctaagatcaatt 40911032  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 259
Target Start/End: Original strand, 43438587 - 43438684
Alignment:
Q  162 gagtgaattgattctctaaaattgatttcggataagagcaagttgaatgtaaagtgatttatgtttggacgtatttgtgtaaaagtggatttgacaat 259  Q
    ||||||||||||| | |||||||| |||  ||||| ||  |||| |||||||||| || |||||||| | |||||| ||||||| || |||| |||||    
T  43438587 gagtgaattgattatgtaaaattgtttttagataaaagtgagttaaatgtaaagttatctatgtttgaatgtatttatgtaaaaatgaatttaacaat 43438684  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 276
Target Start/End: Original strand, 6095244 - 6095368
Alignment:
Q  152 aattgattttgagtgaattgattctctaaaattgatttcggataagagcaagttgaatgtaaagtgatttatgtttggacgtatttgtgtaaaagtggat 251  Q
    |||| ||||||||| ||||||||   |||||||||||   ||||| |   |||||| || ||| ||||||||||||| |  ||||| ||||||| || ||    
T  6095244 aattaattttgagtaaattgatttgataaaattgattctagataataatgagttgattgaaaaatgatttatgtttgaatatatttatgtaaaaatgaat 6095343  T
Q  252 ttgacaatgaatttaagactaaaat 276  Q
    || |||||||||||| | |||||||    
T  6095344 ttaacaatgaatttatggctaaaat 6095368  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 1500072 - 1499996
Alignment:
Q  152 aattgattttgagtgaattgattctctaaaattgatttcggataagagcaagttgaatgtaaagtgatttatgtttg 228  Q
    |||||||||||| |||||||||| | |||||||||||| || ||| ||| |||||| |||||| |||||||||||||    
T  1500072 aattgattttgactgaattgattttgtaaaattgattttggctaaaagcgagttgagtgtaaattgatttatgtttg 1499996  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 279
Target Start/End: Original strand, 34800792 - 34800855
Alignment:
Q  216 tgatttatgtttggacgtatttgtgtaaaagtggatttgacaatgaatttaagactaaaatcaa 279  Q
    ||||||||||||||| |||||||  ||||||||||||||||||| ||||||||  |||||||||    
T  34800792 tgatttatgtttggatgtatttgcataaaagtggatttgacaataaatttaaggttaaaatcaa 34800855  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 188
Target Start/End: Original strand, 46199 - 46237
Alignment:
Q  150 agaattgattttgagtgaattgattctctaaaattgatt 188  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  46199 agaattgattttgagtgaattgattctgtaaaattgatt 46237  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 279
Target Start/End: Original strand, 34776863 - 34776903
Alignment:
Q  239 tgtaaaagtggatttgacaatgaatttaagactaaaatcaa 279  Q
    ||||||||||||||||||||| |||||||||| ||||||||    
T  34776863 tgtaaaagtggatttgacaataaatttaagaccaaaatcaa 34776903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 152 - 227
Target Start/End: Complemental strand, 20660460 - 20660386
Alignment:
Q  152 aattgattttgagtgaattgattctctaaaattgatttcggataagagcaagttgaatgtaaagtgatttatgttt 227  Q
    ||||| |||||| |||||||||| | ||||||| |||| |  || ||| |||||||||||||||||||||||||||    
T  20660460 aattggttttgaatgaattgatt-tgtaaaatttattttgattacgaggaagttgaatgtaaagtgatttatgttt 20660386  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 303
Target Start/End: Original strand, 34805256 - 34805324
Alignment:
Q  236 ttgtgtaaaagtggatttgacaatgaatttaagactaaaatcaattgtataatc-aaaagctacaaatt 303  Q
    ||||||||||||||||||||| || | ||||||  ||||||||| |||| || | ||||||||||||||    
T  34805256 ttgtgtaaaagtggatttgactataattttaaggttaaaatcaagtgtaaaagctaaaagctacaaatt 34805324  T

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Target: scaffold0172 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 230
Target Start/End: Original strand, 15242 - 15320
Alignment:
Q  152 aattgattttgagtgaattgattctctaaaattgatttcggataagagcaagttgaatgtaaagtgatttatgtttgga 230  Q
    ||||||||||||  ||||||||| | | |||||||||| || ||| ||  |||||||| ||||||||||||||||||||    
T  15242 aattgattttgatagaattgattttgtcaaattgattttggttaaaagtgagttgaatataaagtgatttatgtttgga 15320  T

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Target: scaffold0015 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 151 - 230
Target Start/End: Complemental strand, 65617 - 65538
Alignment:
Q  151 gaattgattttgagtgaattgattctctaaaattgatttcggataagagcaagttgaatgtaaagtgatttatgtttgga 230  Q
    ||||| |||||||  ||||||||||| | |||||||||| || ||| |   |||| ||||||||||||||||||||||||    
T  65617 gaattaattttgatagaattgattctgtgaaattgattttggttaaaaatgagtttaatgtaaagtgatttatgtttgga 65538  T

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Target: scaffold0036 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 864 - 900
Alignment:
Q  152 aattgattttgagtgaattgattctctaaaattgatt 188  Q
    |||||||||| | ||||||||||||||||||||||||    
T  864 aattgattttaaatgaattgattctctaaaattgatt 900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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