View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14305_low_7 (Length: 284)

Name: NF14305_low_7
Description: NF14305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14305_low_7
NF14305_low_7
[»] chr1 (14 HSPs)
chr1 (1-221)||(30368350-30368561)
chr1 (101-221)||(13094233-13094349)
chr1 (101-221)||(13161355-13161471)
chr1 (101-221)||(13129662-13129778)
chr1 (147-221)||(13070418-13070492)
chr1 (97-221)||(13100831-13100951)
chr1 (150-221)||(13244763-13244834)
chr1 (150-221)||(13085986-13086057)
chr1 (70-221)||(13007008-13007150)
chr1 (147-221)||(13204335-13204409)
chr1 (97-221)||(13081107-13081227)
chr1 (142-221)||(13271457-13271536)
chr1 (158-221)||(19279410-19279473)
chr1 (159-218)||(13010661-13010720)


Alignment Details
Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 30368561 - 30368350
Alignment:
Q  1 ataaaataccatatagtataatatcactagaccataacaatatttaaccaggacatagagagcaacaatgtcaaatgcatcttttagcgactttaatttg 100  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||  |||| ||||||||||||||||||||||||||||||||||||  || ||     |    
T  30368561 ataaaataccatataatataatatcactagaccataagaatattcgaccaagacatagagagcaacaatgtcaaatgcatcttttagtaacctt-----g 30368467  T
Q  101 accttcaagccatgtttcatatatgcgaaggaaaagagaagccctaggggttacagggtgaccttccaccacctgtatgtgaaacttccataacaaggca 200  Q
    || |||||||||||||||||  |    ||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30368466 acgttcaagccatgtttcattca----aaggacaacagaagccctaggggttacagggtgaccttccacgacctgtatgtgaaacttccataacaaggca 30368371  T
Q  201 gctgcaaccatcttcatttga 221  Q
    |||||||||||||||||||||    
T  30368370 gctgcaaccatcttcatttga 30368350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 101 - 221
Target Start/End: Original strand, 13094233 - 13094349
Alignment:
Q  101 accttcaagccatgtttcatatatgcgaaggaaaagagaagccctaggggttacagggtgaccttccaccacctgtatgtgaaacttccataacaaggca 200  Q
    ||||||||||||||||||||    |||||| || | ||||  ||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||    
T  13094233 accttcaagccatgtttcat----gcgaagaaacacagaaagccttggggttacagggtgaccttccaccacctgtatgtgaaacttccgtaacaaagca 13094328  T
Q  201 gctgcaaccatcttcatttga 221  Q
    ||||| |||||||||||||||    
T  13094329 gctgcgaccatcttcatttga 13094349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 101 - 221
Target Start/End: Original strand, 13161355 - 13161471
Alignment:
Q  101 accttcaagccatgtttcatatatgcgaaggaaaagagaagccctaggggttacagggtgaccttccaccacctgtatgtgaaacttccataacaaggca 200  Q
    ||||||||||||||||||||    |||||| || | ||||  ||| ||||||||| ||||||||||||||||||||||||||||||||| |||||| |||    
T  13161355 accttcaagccatgtttcat----gcgaagaaacacagaaagccttggggttacaaggtgaccttccaccacctgtatgtgaaacttccgtaacaaagca 13161450  T
Q  201 gctgcaaccatcttcatttga 221  Q
    ||||| |||||||||||||||    
T  13161451 gctgcgaccatcttcatttga 13161471  T

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Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 101 - 221
Target Start/End: Original strand, 13129662 - 13129778
Alignment:
Q  101 accttcaagccatgtttcatatatgcgaaggaaaagagaagccctaggggttacagggtgaccttccaccacctgtatgtgaaacttccataacaaggca 200  Q
    ||||||||||||||||||||    |||||| |  | ||||  ||| ||||||||||||||||||||||||||||||||||||||||||  |||||| |||    
T  13129662 accttcaagccatgtttcat----gcgaagaagcacagaaagccttggggttacagggtgaccttccaccacctgtatgtgaaacttctgtaacaaagca 13129757  T
Q  201 gctgcaaccatcttcatttga 221  Q
    ||||| |||||||||||||||    
T  13129758 gctgcgaccatcttcatttga 13129778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 147 - 221
Target Start/End: Complemental strand, 13070492 - 13070418
Alignment:
Q  147 ggggttacagggtgaccttccaccacctgtatgtgaaacttccataacaaggcagctgcaaccatcttcatttga 221  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||| |||||||||||||||    
T  13070492 ggggttacagggtgaccttccaccacctgtatgtgaaacttctgtaacaaagcagctgcgaccatcttcatttga 13070418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 97 - 221
Target Start/End: Original strand, 13100831 - 13100951
Alignment:
Q  97 tttgaccttcaagccatgtttcatatatgcgaaggaaaagagaagccctaggggttacagggtgaccttccaccacctgtatgtgaaacttccataacaa 196  Q
    |||||||||||||||||||||||| |    |||| | || ||||  | | ||||||| ||||||||||||||||||||||||||||||||||  ||||||    
T  13100831 tttgaccttcaagccatgtttcatgt----gaagaacaaaagaaagcttcggggttatagggtgaccttccaccacctgtatgtgaaacttcggtaacaa 13100926  T
Q  197 ggcagctgcaaccatcttcatttga 221  Q
     |||||||| |||||||||||||||    
T  13100927 agcagctgcgaccatcttcatttga 13100951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 150 - 221
Target Start/End: Complemental strand, 13244834 - 13244763
Alignment:
Q  150 gttacagggtgaccttccaccacctgtatgtgaaacttccataacaaggcagctgcaaccatcttcatttga 221  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||| |||||||||    
T  13244834 gttacagggtgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttga 13244763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 150 - 221
Target Start/End: Original strand, 13085986 - 13086057
Alignment:
Q  150 gttacagggtgaccttccaccacctgtatgtgaaacttccataacaaggcagctgcaaccatcttcatttga 221  Q
    |||||||  ||||||||||| || ||||||||||||||||||||||  |||||||||||||| |||||||||    
T  13085986 gttacagaatgaccttccacaacttgtatgtgaaacttccataacatagcagctgcaaccattttcatttga 13086057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 221
Target Start/End: Original strand, 13007008 - 13007150
Alignment:
Q  70 gtcaaatgcatcttttagcgactttaatttgaccttcaagccatgtttcatatatgcgaaggaaaagagaagccctaggggttacagggtgaccttccac 169  Q
    |||||||||||||||||| ||||||||     ||||||||||||||||||| |    |||| | || ||||  | | ||||||| |||||||||| ||||    
T  13007008 gtcaaatgcatcttttagtgactttaa-----ccttcaagccatgtttcatgt----gaagaacaaaagaaagcttcggggttatagggtgacctgccac 13007098  T
Q  170 cacctgtatgtgaaacttccataacaaggcagctgcaaccatcttcatttga 221  Q
    ||||| ||||||||||||   |||||| || ||||| |||||||||||||||    
T  13007099 cacctttatgtgaaactttggtaacaaagctgctgcgaccatcttcatttga 13007150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 221
Target Start/End: Original strand, 13204335 - 13204409
Alignment:
Q  147 ggggttacagggtgaccttccaccacctgtatgtgaaacttccataacaaggcagctgcaaccatcttcatttga 221  Q
    ||||||||||||||||||||||| | || ||||||||| |||  |||||| |||||||| |||||||||||||||    
T  13204335 ggggttacagggtgaccttccactatctttatgtgaaaattctgtaacaaagcagctgcgaccatcttcatttga 13204409  T

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Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 221
Target Start/End: Complemental strand, 13081227 - 13081107
Alignment:
Q  97 tttgaccttcaagccatgtttcatatatgcgaaggaaaagagaagccctaggggttacagggtgaccttccaccacctgtatgtgaaacttccataacaa 196  Q
    ||||||||| |||||||||| |||    |||||||| || |||| |||||||  |||  | |||||||||||||||||| |||||||||||  |||| |     
T  13081227 tttgaccttaaagccatgttccat----gcgaaggagaatagaaaccctaggaattattgagtgaccttccaccacctgaatgtgaaacttaaataaaac 13081132  T
Q  197 ggcagctgcaaccatcttcatttga 221  Q
     |||||||||||||| |||||||||    
T  13081131 tgcagctgcaaccattttcatttga 13081107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 221
Target Start/End: Original strand, 13271457 - 13271536
Alignment:
Q  142 ccctaggggttacagggtgaccttccaccacctgtatgtgaaacttccataacaaggcagctgcaaccatcttcatttga 221  Q
    ||||||| || ||||  |||||||||||||| |||||||||||||||||||| |  | |||||||||||| |||||||||    
T  13271457 ccctaggagtaacagactgaccttccaccacatgtatgtgaaacttccataatacagaagctgcaaccattttcatttga 13271536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 19279473 - 19279410
Alignment:
Q  158 gtgaccttccaccacctgtatgtgaaacttccataacaaggcagctgcaaccatcttcatttga 221  Q
    |||||||||||| ||||||||| ||||||||||||| |  |||||||||||||| |||||||||    
T  19279473 gtgaccttccacgacctgtatgcgaaacttccataatacagcagctgcaaccattttcatttga 19279410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 218
Target Start/End: Original strand, 13010661 - 13010720
Alignment:
Q  159 tgaccttccaccacctgtatgtgaaacttccataacaaggcagctgcaaccatcttcatt 218  Q
    |||||||||||||| |||||| |||| |||||||||||  ||||||| ||||||||||||    
T  13010661 tgaccttccaccacttgtatgcgaaatttccataacaaatcagctgcgaccatcttcatt 13010720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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